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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison

    READ cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    		 PPI
    		 Motif Expression TFs Genes Data Samples Precision
    		 Reference
    1 Rectum adenocarcinoma PANDA netZooR 0.9
    AdjCodeVis
    		 644 29375 TCGA 165 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    		 Gender Race Stage
    		 Vital status Age
    		 Days to last follow up Tumor ID
    TCGA-AG-3609-01A FEMALE [Not Available] Stage IIIC Alive 65 0 READ
    TCGA-AG-A032-01A MALE [Not Available] Stage IIIB Alive 68 31 READ
    TCGA-AG-3894-01A MALE [Not Available] Stage IIA Alive 65 30 READ
    TCGA-AG-3582-01A MALE [Not Available] Stage IV Alive 75 31 READ
    TCGA-EF-5831-01A MALE WHITE Stage IIA Alive 72 73 READ
    TCGA-F5-6812-01A MALE WHITE Stage IIA Alive 67 20 READ
    TCGA-DC-6158-01A MALE WHITE Stage I Alive 70 212 READ
    TCGA-AF-6672-01A MALE WHITE Stage IV Alive 43 224 READ
    TCGA-AG-3598-01A MALE [Not Available] Stage IIA Alive 69 0 READ
    TCGA-AG-A01L-01A MALE [Not Available] Stage IIIB Alive 58 0 READ
    TCGA-DC-6681-01A FEMALE WHITE Stage IVA Alive 70 181 READ
    TCGA-AF-3911-01A MALE WHITE Stage IIIC Alive 48 537 READ
    TCGA-G5-6572-01A MALE WHITE [Not Available] Dead 56 [Not Available] READ
    TCGA-AG-3575-01A MALE [Not Available] Stage II Alive 51 365 READ
    TCGA-AG-A036-01A MALE [Not Available] Stage III Alive 71 31 READ
    TCGA-CL-4957-01A FEMALE [Not Available] [Discrepancy] Alive 79 425 READ
    TCGA-AG-A020-01A FEMALE [Not Available] Stage III Alive 57 31 READ
    TCGA-DY-A0XA-01A FEMALE WHITE Stage IIA Alive 57 3635 READ
    TCGA-CI-6624-01C FEMALE WHITE Stage I Alive 53 144 READ
    TCGA-AG-4005-01A MALE [Not Available] Stage IV Alive 64 0 READ
    TCGA-AH-6644-01A MALE WHITE [Not Available] Alive 73 22 READ
    TCGA-CI-6619-01B MALE WHITE Stage IV Alive 41 184 READ
    TCGA-AF-6136-01A FEMALE WHITE Stage IIIB Alive 72 232 READ
    TCGA-AG-A01N-01A FEMALE [Not Available] Stage IV Alive 68 31 READ
    TCGA-DY-A1DC-01A FEMALE WHITE Stage IIA Dead 72 [Not Available] READ
    TCGA-CI-6623-01B MALE WHITE Stage I Alive 44 285 READ
    TCGA-AG-3611-01A MALE [Not Available] Stage IIA Alive 72 0 READ
    TCGA-AG-3592-01A MALE [Not Available] Stage IIA Alive 68 0 READ
    TCGA-EI-6509-01A MALE WHITE Stage IIIC Alive 53 250 READ
    TCGA-EI-6512-01A FEMALE WHITE Stage IIIB Alive 64 20 READ
    TCGA-EI-6514-01A FEMALE WHITE Stage IIA Alive 59 216 READ
    TCGA-AG-3896-01A FEMALE [Not Available] Stage I Alive 85 31 READ
    TCGA-AG-3878-01A MALE [Not Available] Stage I Alive 64 30 READ
    TCGA-AG-3600-01A MALE [Not Available] Stage IIIC Alive 62 0 READ
    TCGA-AF-4110-01A MALE WHITE Stage IVA Alive 77 441 READ
    TCGA-CL-5918-01A FEMALE WHITE Stage IIA Alive 90 0 READ
    TCGA-AG-3599-01A MALE [Not Available] Stage I Alive 70 30 READ
    TCGA-DC-5337-01A MALE WHITE Stage I Alive 69 304 READ
    TCGA-G5-6235-01A MALE WHITE Stage IIIB Alive 72 1451 READ
    TCGA-DC-4745-01A FEMALE WHITE Stage IIIB Alive 49 334 READ
    TCGA-AG-4022-01A FEMALE [Not Available] Stage II Alive 59 30 READ
    TCGA-DC-6160-01A MALE WHITE Stage I Alive 68 608 READ
    TCGA-DC-6683-01A MALE WHITE Stage IIIB Alive 43 153 READ
    TCGA-F5-6571-01A FEMALE WHITE Stage IIA Alive 62 26 READ
    TCGA-DY-A1DF-01A FEMALE WHITE Stage IIIC Dead 73 734 READ
    TCGA-AG-3742-01A FEMALE [Not Available] Stage I Alive 85 30 READ
    TCGA-DC-4749-01A MALE WHITE Stage I Alive 57 335 READ
    TCGA-EI-6882-01A MALE WHITE Stage IIA Alive 59 108 READ
    TCGA-AH-6544-01A MALE WHITE [Not Available] Alive 60 15 READ
    TCGA-AF-2692-01A FEMALE WHITE Stage IIA Alive 54 412 READ
    TCGA-AG-3580-01A MALE [Not Available] Stage I Alive 67 0 READ
    TCGA-AG-3731-01A MALE [Not Available] Stage IV Alive 65 31 READ
    TCGA-AG-3882-01A FEMALE [Not Available] Stage I Alive 66 0 READ
    TCGA-EI-6510-01A FEMALE WHITE [Discrepancy] Alive 77 14 READ
    TCGA-AG-3893-01A MALE [Not Available] Stage IIIB Alive 74 30 READ
    TCGA-AG-3608-01A FEMALE [Not Available] Stage IIA Alive 79 0 READ
    TCGA-AG-3574-01A FEMALE [Not Available] Stage II Alive 89 0 READ
    TCGA-AG-3881-01A FEMALE [Not Available] Stage IIA Alive 83 0 READ
    TCGA-AF-2691-01A FEMALE WHITE Stage I Alive 48 323 READ
    TCGA-AG-3593-01A FEMALE [Not Available] Stage IIA Alive 72 0 READ
    TCGA-AG-3601-01A MALE [Not Available] Stage IIIB Alive 68 0 READ
    TCGA-AG-3909-01A FEMALE [Not Available] Stage IIIB Alive 69 0 READ
    TCGA-AF-2687-01A MALE WHITE Stage IIIC Alive 57 595 READ
    TCGA-AG-3898-01A MALE [Not Available] Stage IIA Alive 61 0 READ
    TCGA-AG-4007-01A MALE [Not Available] Stage IV Alive 87 31 READ
    TCGA-AG-3999-01A FEMALE [Not Available] Stage IIIC Alive 61 31 READ
    TCGA-G5-6641-01A MALE WHITE Stage IIIA Alive 67 636 READ
    TCGA-EI-6506-01A FEMALE WHITE Stage IIA Alive 78 232 READ
    TCGA-AG-3728-01A MALE [Not Available] Stage IIIB Alive 73 0 READ
    TCGA-CI-6621-01A MALE WHITE Stage IIIB Alive 63 0 READ
    TCGA-AG-3602-01A FEMALE [Not Available] Stage IIIC Alive 66 0 READ
    TCGA-F5-6702-01A MALE WHITE Stage IVA Alive 71 66 READ
    TCGA-EF-5830-01A MALE WHITE Stage IIB Alive 54 15 READ
    TCGA-AG-3594-01A MALE [Not Available] Stage IIA Alive 77 0 READ
    TCGA-AG-3901-01A FEMALE [Not Available] Stage IIIB Alive 67 0 READ
    TCGA-AH-6547-01A FEMALE WHITE [Not Available] Alive 79 44 READ
    TCGA-AG-A026-01A MALE [Not Available] Stage II Dead 66 [Not Available] READ
    TCGA-AG-A011-01A MALE [Not Available] Stage IIA Alive 80 0 READ
    TCGA-AG-A02G-01A MALE [Not Available] Stage IV Alive 66 0 READ
    TCGA-AH-6897-01A MALE WHITE Stage I Alive 48 140 READ
    TCGA-AG-A00Y-01A MALE [Not Available] Stage IIA Alive 68 0 READ
    TCGA-AG-A014-01A MALE [Not Available] Stage I Alive 86 485 READ
    TCGA-AF-2690-01A FEMALE WHITE Stage IIIC Alive 76 358 READ
    TCGA-CL-5917-01A FEMALE WHITE Stage IIIC Alive 71 1826 READ
    TCGA-AG-A00C-01A FEMALE [Not Available] Stage IIIB Alive 49 0 READ
    TCGA-AG-3887-01A MALE [Not Available] Stage IIA Alive 68 28 READ
    TCGA-AG-A015-01A FEMALE [Not Available] Stage I Alive 64 0 READ
    TCGA-AG-A02X-01A MALE [Not Available] Stage I Alive 77 1247 READ
    TCGA-DC-6682-01A MALE WHITE Stage IIA Alive 57 122 READ
    TCGA-DC-6157-01A MALE BLACK OR AFRICAN AMERICAN Stage I Alive 48 850 READ
    TCGA-AF-6655-01A MALE WHITE Stage IIIA Alive 66 194 READ
    TCGA-DT-5265-01A MALE ASIAN Stage II Alive 51 8 READ
    TCGA-AG-3885-01A FEMALE [Not Available] Stage IIIB Alive 71 0 READ
    TCGA-AG-3732-01A FEMALE [Not Available] Stage I Alive 78 0 READ
    TCGA-AF-3400-01A MALE WHITE Stage IIA Alive 54 387 READ
    TCGA-AG-3583-01A MALE [Not Available] Stage IV Alive 66 61 READ
    TCGA-AG-A008-01A FEMALE [Not Available] Stage I Alive 50 0 READ
    TCGA-DY-A1DG-01A MALE WHITE Stage IVA Dead 75 [Not Available] READ
    TCGA-DY-A1H8-01A FEMALE WHITE Stage IIIA Dead 77 992 READ
    TCGA-AF-A56N-01A FEMALE BLACK OR AFRICAN AMERICAN Stage IIA Alive 47 138 READ
    TCGA-AG-3883-01A MALE [Not Available] Stage I Alive 69 31 READ
    TCGA-CI-6620-01A FEMALE WHITE Stage IVA Alive 41 184 READ
    TCGA-EI-6507-01A MALE WHITE Stage IIA Alive 60 5 READ
    TCGA-AF-A56L-01A FEMALE BLACK OR AFRICAN AMERICAN Stage IIIC Alive 48 1760 READ
    TCGA-AG-A01W-01A FEMALE [Not Available] Stage II Alive 67 0 READ
    TCGA-AG-3584-01A MALE [Not Available] Stage IV Alive 60 0 READ
    TCGA-F5-6864-01A FEMALE WHITE Stage IIIB Alive 74 14 READ
    TCGA-AF-A56K-01A MALE BLACK OR AFRICAN AMERICAN Stage IIA Alive 56 2396 READ
    TCGA-AG-3587-01A MALE [Not Available] Stage I Alive 65 31 READ
    TCGA-CI-6622-01A MALE WHITE Stage IIB Alive 74 212 READ
    TCGA-EI-7002-01A MALE WHITE Stage IV Alive 58 84 READ
    TCGA-AG-4001-01A FEMALE [Not Available] Stage IIA Alive 74 31 READ
    TCGA-EI-6881-01A MALE WHITE Stage IIIA Alive 60 188 READ
    TCGA-EI-6885-01A FEMALE WHITE Stage IV Alive 57 160 READ
    TCGA-AG-3605-01A FEMALE [Not Available] Stage IV Alive 85 30 READ
    TCGA-EI-6508-01A FEMALE WHITE Stage IIIB Alive 48 66 READ
    TCGA-F5-6811-01A FEMALE WHITE Stage IIA Alive 72 31 READ
    TCGA-AG-3725-01A FEMALE [Not Available] Stage III Alive 90 0 READ
    TCGA-AG-4008-01A MALE [Not Available] Stage IIA Alive 63 31 READ
    TCGA-AH-6549-01A MALE WHITE [Not Available] Alive 66 6 READ
    TCGA-DC-6155-01A FEMALE WHITE Stage IIIA Alive 31 225 READ
    TCGA-AG-A023-01A FEMALE [Not Available] Stage IV Alive 62 61 READ
    TCGA-AG-3727-01A FEMALE [Not Available] Stage III Alive 78 30 READ
    TCGA-AG-A01J-01A FEMALE [Not Available] Stage IIA Alive 59 31 READ
    TCGA-EI-7004-01A FEMALE WHITE [Discrepancy] Alive 37 62 READ
    TCGA-AG-A01Y-01A FEMALE [Not Available] Stage II Alive 49 0 READ
    TCGA-DY-A1DE-01A FEMALE WHITE Stage IIA Alive 56 3667 READ
    TCGA-F5-6813-01A MALE WHITE Stage IIIC Alive 70 21 READ
    TCGA-AG-A00H-01A MALE [Not Available] Stage IIA Alive 75 29 READ
    TCGA-DC-5869-01A FEMALE BLACK OR AFRICAN AMERICAN Stage IIIB Alive 62 153 READ
    TCGA-AG-3726-01A FEMALE [Not Available] Stage I Alive 63 243 READ
    TCGA-AF-2693-01A MALE WHITE Stage I Alive 75 581 READ
    TCGA-AH-6903-01A MALE WHITE Stage IIIB Alive 46 55 READ
    TCGA-AG-3591-01A FEMALE [Not Available] Stage IIA Alive 66 0 READ
    TCGA-AF-5654-01A FEMALE WHITE Stage I Alive 73 257 READ
    TCGA-F5-6465-01A FEMALE WHITE Stage IIA Alive 64 103 READ
    TCGA-AG-4021-01A FEMALE [Not Available] Stage IV Alive 84 0 READ
    TCGA-AG-3902-01A MALE [Not Available] Stage IIA Alive 61 0 READ
    TCGA-AG-3612-01A FEMALE [Not Available] Stage IIIB Alive 55 0 READ
    TCGA-AH-6643-01A MALE WHITE Stage IIIC Alive 50 21 READ
    TCGA-EI-6884-01A MALE WHITE Stage IIIA Alive 71 83 READ
    TCGA-F5-6863-01A FEMALE WHITE Stage IIIB Alive 71 23 READ
    TCGA-AG-3578-01A FEMALE [Not Available] Stage IIA Alive 76 0 READ
    TCGA-AG-3890-01A MALE [Not Available] Stage I Alive 62 0 READ
    TCGA-EI-6917-01A MALE WHITE Stage IIIA Alive 33 237 READ
    TCGA-AG-3581-01A MALE [Not Available] Stage I Alive 63 31 READ
    TCGA-AG-3892-01A FEMALE [Not Available] Stage I Alive 57 31 READ
    TCGA-AF-3913-01A MALE BLACK OR AFRICAN AMERICAN Stage IV Dead 60 [Not Available] READ
    TCGA-EI-6511-01A MALE WHITE Stage IIIB Alive 52 121 READ
    TCGA-G5-6233-01A MALE WHITE [Discrepancy] Dead 74 [Not Available] READ
    TCGA-AG-A025-01A FEMALE [Not Available] Stage I Alive 62 1520 READ
    TCGA-EI-6883-01A MALE WHITE Stage IIC Alive 63 121 READ
    TCGA-BM-6198-01A MALE WHITE Stage IIIB Alive 73 310 READ
    TCGA-DC-6156-01A MALE WHITE Stage IVA Alive 62 212 READ
    TCGA-F5-6861-01A FEMALE WHITE Stage IIA Alive 60 34 READ
    TCGA-AG-A002-01A MALE [Not Available] Stage I Alive 35 31 READ
    TCGA-EI-6513-01A MALE WHITE Stage IIIB Alive 59 210 READ
    TCGA-AG-A016-01A MALE [Not Available] Stage IV Alive 55 31 READ
    TCGA-AG-3586-01A FEMALE [Not Available] Stage III Alive 72 31 READ
    TCGA-F5-6814-01A MALE WHITE Stage IIA Alive 57 16 READ
    TCGA-AG-4015-01A FEMALE [Not Available] Stage IIA Alive 85 0 READ
    TCGA-DC-6154-01A FEMALE WHITE Stage IVA Alive 57 273 READ
    TCGA-AG-A02N-01A MALE [Not Available] Stage II Alive 67 1885 READ
    TCGA-DY-A1DD-01A FEMALE WHITE Stage IIIB Dead 77 1741 READ
    TCGA-F5-6464-01A FEMALE WHITE Stage IIIC Alive 77 0 READ
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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