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    v0.1 cell line networks
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    Leukemia cancer networks

    Data sets 1 Networks Single-sample 100

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Leukemia LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 100 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000002 HL60 905938.0 Female caucasian - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000004 HEL 907053.0 Male - Suspension haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000005 HEL9217 - Male caucasian Suspension bone_marrow - Leukemia LAML
    Adj359 MBVis
    ACH-000006 MONOMAC6 908148.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000020 MHHCALL2 908132.0 Female caucasian - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000032 MHHCALL3 - Female - - bone_marrow - Leukemia ALL
    Adj359 MBVis
    ACH-000034 PLB985 - Female - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000045 MV411 908156.0 Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000059 SUPB15 1247871.0 Male caucasian - bone_marrow Primary Leukemia ALL
    Adj359 MBVis
    ACH-000065 OCIAML5 1330983.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000070 697 906800.0 Male - Adherent bone_marrow Primary Leukemia ALL
    Adj359 MBVis
    ACH-000072 MEG01 908126.0 Male - Mixed adherent and suspension bone_marrow - Leukemia LCML
    Adj359 MBVis
    ACH-000074 KU812 907311.0 Male asian - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000076 NCO2 - Female - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000080 BDCM - Male - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000081 GDM1 906870.0 Female caucasian - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000084 MUTZ3 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000101 KE37 907277.0 Male - Suspension haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000104 LOUCY 907789.0 Female caucasian - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000105 ALLSIL 1295740.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000112 SIGM5 909715.0 Male - - bone_marrow - Leukemia LAML
    Adj359 MBVis
    ACH-000113 OCIAML2 910947.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000122 SUPT11 - Male - - bone_marrow - Leukemia -
    Adj359 MBVis
    ACH-000130 NALM19 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000146 THP1 909771.0 Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000151 JM1 1327768.0 Male - Suspension haematopoietic_and_lymphoid_tissue - Leukemia DLBC
    Adj359 MBVis
    ACH-000156 MHHCALL4 908133.0 Male caucasian - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000166 KASUMI6 - Male asian - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000168 NOMO1 908451.0 Female - Adherent bone_marrow Primary Leukemia LAML
    Adj359 MBVis
    ACH-000195 SET2 - Female - Suspension haematopoietic_and_lymphoid_tissue - Leukemia -
    Adj359 MBVis
    ACH-000197 TALL1 909762.0 Male - - bone_marrow Primary Leukemia ALL
    Adj359 MBVis
    ACH-000198 EOL1 906856.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000218 PL21 1330991.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000241 JK1 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000263 KASUMI1 907275.0 Male asian - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000294 NB4 1323913.0 Female - - bone_marrow Primary Leukemia LAML
    Adj359 MBVis
    ACH-000295 EM2 906855.0 Female caucasian - bone_marrow - Leukemia LCML
    Adj359 MBVis
    ACH-000299 HNT34 - Female - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000301 LAMA84 907783.0 Female - - haematopoietic_and_lymphoid_tissue Primary Leukemia LCML
    Adj359 MBVis
    ACH-000321 MOLM6 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000326 JURLMK1 1327771.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000336 OCIAML3 1290455.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000346 JVM3 907270.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia CLL
    Adj359 MBVis
    ACH-000362 MOLM13 1330947.0 Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000369 MOLM16 1330948.0 Female asian - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000372 P12ICHIKAWA 909251.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000373 SKM1 909722.0 Male asian Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000386 KG1 907278.0 Male caucasian - bone_marrow Primary Leukemia LAML
    Adj359 MBVis
    ACH-000387 TF1 - Male asian Suspension bone_marrow - Leukemia LAML
    Adj359 MBVis
    ACH-000405 MEC1 - Male caucasian Adherent haematopoietic_and_lymphoid_tissue - Leukemia CLL
    Adj359 MBVis
    ACH-000406 U937 - Male caucasian Suspension pleural_effusion Metastasis Leukemia DLBC
    Adj359 MBVis
    ACH-000432 BV173 910710.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000439 ME1 1330942.0 Male asian - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000462 NALM1 - Female - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000487 F36P - Male - Suspension pleural_effusion Metastasis Leukemia LAML
    Adj359 MBVis
    ACH-000492 MUTZ5 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000498 KO52 1330932.0 Male - Suspension bone_marrow - Leukemia LAML
    Adj359 MBVis
    ACH-000519 PEER - Female - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000551 K562 905940.0 Female - Suspension pleural_effusion Metastasis Leukemia LCML
    Adj359 MBVis
    ACH-000557 AML193 - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-000602 M07E - Female - Suspension haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000604 KYO1 - Male asian Suspension haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000636 RPMI8402 909702.0 Female - Suspension haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000641 CMK 910566.0 Male - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000728 KASUMI2 - Male - - bone_marrow - Leukemia ALL
    Adj359 MBVis
    ACH-000751 OCIM1 1330985.0 Unknown - - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000770 P31FUJ 909253.0 Male asian - haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-000782 SEM - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000874 RS411 909703.0 Female caucasian - bone_marrow Primary Leukemia ALL
    Adj359 MBVis
    ACH-000918 MOLT16 908147.0 Female - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000920 CMLT1 910951.0 Female - - haematopoietic_and_lymphoid_tissue - Leukemia LCML
    Adj359 MBVis
    ACH-000922 RCHACV 1330994.0 Female - Adherent bone_marrow - Leukemia ALL
    Adj359 MBVis
    ACH-000937 PF382 909260.0 Female - - pleural_effusion - Leukemia ALL
    Adj359 MBVis
    ACH-000938 NALM6 908158.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000942 HPBALL - Male asian - haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000953 SUPT1 909743.0 Male caucasian - pleural_effusion Metastasis Leukemia ALL
    Adj359 MBVis
    ACH-000960 REH 909696.0 Female north_african Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000964 MOLT3 - Male - - haematopoietic_and_lymphoid_tissue - Leukemia ALL
    Adj359 MBVis
    ACH-000981 DND41 1297446.0 Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-000983 KCL22 1330931.0 Female - - pleural_effusion - Leukemia LCML
    Adj359 MBVis
    ACH-000995 JURKAT 998184.0 Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-001036 CMK115 - Male - Suspension haematopoietic_and_lymphoid_tissue - Leukemia LAML
    Adj359 MBVis
    ACH-001106 KOPN8 1330933.0 Female - - haematopoietic_and_lymphoid_tissue Primary Leukemia ALL
    Adj359 MBVis
    ACH-001129 MONOMAC1 - Male - - haematopoietic_and_lymphoid_tissue Primary Leukemia LAML
    Adj359 MBVis
    ACH-001484 CI - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001485 CII - Female - Loosely Adherent haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001520 HG3 - Male - Mixed haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001573 MOLM1 - Male - Suspension bone_marrow Metastasis Leukemia -
    Adj359 MBVis
    ACH-001574 MOLM14 - Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001577 MUTZ8 - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001613 OCIAML4 - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001618 OCIM2 - Unknown - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001634 PGA1 - Male - Suspension haematopoietic_and_lymphoid_tissue Primary Leukemia -
    Adj359 MBVis
    ACH-001647 SHI1 - Male - Suspension bone_marrow Metastasis Leukemia -
    Adj359 MBVis
    ACH-001656 SKNO1 - Male - Suspension bone_marrow Metastasis Leukemia LAML
    Adj359 MBVis
    ACH-001735 SEMK2 - Female - not found haematopoietic_and_lymphoid_tissue - Leukemia -
    Adj359 MBVis
    ACH-001736 HB1119 - Unknown - not found haematopoietic_and_lymphoid_tissue - Leukemia -
    Adj359 MBVis
    ACH-001737 HSB2 - Unknown - Adherent haematopoietic_and_lymphoid_tissue - Leukemia -
    Adj359 MBVis
    ACH-001993 NALM16 - Female - Adherent haematopoietic_and_lymphoid_tissue - Leukemia -
    Adj359 MBVis
    ACH-002059 P30OHK - Female - Suspension bone_marrow Primary Leukemia ALL
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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