To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Leukemia | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 133 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000002 | HL60 | 905938.0 | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000004 | HEL | 907053.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000005 | HEL9217 | - | Male | caucasian | Suspension | bone_marrow | - | Leukemia | LAML | |
| ACH-000006 | MONOMAC6 | 908148.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000020 | MHHCALL2 | 908132.0 | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000032 | MHHCALL3 | - | Female | - | - | bone_marrow | - | Leukemia | ALL | |
| ACH-000034 | PLB985 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000045 | MV411 | 908156.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000059 | SUPB15 | 1247871.0 | Male | caucasian | - | bone_marrow | Primary | Leukemia | ALL | |
| ACH-000065 | OCIAML5 | 1330983.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000070 | 697 | 906800.0 | Male | - | Adherent | bone_marrow | Primary | Leukemia | ALL | |
| ACH-000072 | MEG01 | 908126.0 | Male | - | Mixed adherent and suspension | bone_marrow | - | Leukemia | LCML | |
| ACH-000074 | KU812 | 907311.0 | Male | asian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000076 | NCO2 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000080 | BDCM | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000081 | GDM1 | 906870.0 | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000084 | MUTZ3 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000101 | KE37 | 907277.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000104 | LOUCY | 907789.0 | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000105 | ALLSIL | 1295740.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000112 | SIGM5 | 909715.0 | Male | - | - | bone_marrow | - | Leukemia | LAML | |
| ACH-000113 | OCIAML2 | 910947.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000122 | SUPT11 | - | Male | - | - | bone_marrow | - | Leukemia | - | |
| ACH-000130 | NALM19 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000146 | THP1 | 909771.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000151 | JM1 | 1327768.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | DLBC | |
| ACH-000156 | MHHCALL4 | 908133.0 | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000166 | KASUMI6 | - | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000168 | NOMO1 | 908451.0 | Female | - | Adherent | bone_marrow | Primary | Leukemia | LAML | |
| ACH-000195 | SET2 | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | - | |
| ACH-000197 | TALL1 | 909762.0 | Male | - | - | bone_marrow | Primary | Leukemia | ALL | |
| ACH-000198 | EOL1 | 906856.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000218 | PL21 | 1330991.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000241 | JK1 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000263 | KASUMI1 | 907275.0 | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000294 | NB4 | 1323913.0 | Female | - | - | bone_marrow | Primary | Leukemia | LAML | |
| ACH-000295 | EM2 | 906855.0 | Female | caucasian | - | bone_marrow | - | Leukemia | LCML | |
| ACH-000299 | HNT34 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000301 | LAMA84 | 907783.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LCML | |
| ACH-000321 | MOLM6 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000326 | JURLMK1 | 1327771.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000336 | OCIAML3 | 1290455.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000346 | JVM3 | 907270.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | CLL | |
| ACH-000362 | MOLM13 | 1330947.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000369 | MOLM16 | 1330948.0 | Female | asian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000372 | P12ICHIKAWA | 909251.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000373 | SKM1 | 909722.0 | Male | asian | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000386 | KG1 | 907278.0 | Male | caucasian | - | bone_marrow | Primary | Leukemia | LAML | |
| ACH-000387 | TF1 | - | Male | asian | Suspension | bone_marrow | - | Leukemia | LAML | |
| ACH-000405 | MEC1 | - | Male | caucasian | Adherent | haematopoietic_and_lymphoid_tissue | - | Leukemia | CLL | |
| ACH-000406 | U937 | - | Male | caucasian | Suspension | pleural_effusion | Metastasis | Leukemia | DLBC | |
| ACH-000432 | BV173 | 910710.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000439 | ME1 | 1330942.0 | Male | asian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000462 | NALM1 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000487 | F36P | - | Male | - | Suspension | pleural_effusion | Metastasis | Leukemia | LAML | |
| ACH-000492 | MUTZ5 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000498 | KO52 | 1330932.0 | Male | - | Suspension | bone_marrow | - | Leukemia | LAML | |
| ACH-000519 | PEER | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000551 | K562 | 905940.0 | Female | - | Suspension | pleural_effusion | Metastasis | Leukemia | LCML | |
| ACH-000557 | AML193 | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-000602 | M07E | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000604 | KYO1 | - | Male | asian | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000636 | RPMI8402 | 909702.0 | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000641 | CMK | 910566.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000728 | KASUMI2 | - | Male | - | - | bone_marrow | - | Leukemia | ALL | |
| ACH-000751 | OCIM1 | 1330985.0 | Unknown | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000770 | P31FUJ | 909253.0 | Male | asian | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-000782 | SEM | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000874 | RS411 | 909703.0 | Female | caucasian | - | bone_marrow | Primary | Leukemia | ALL | |
| ACH-000918 | MOLT16 | 908147.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000920 | CMLT1 | 910951.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | LCML | |
| ACH-000922 | RCHACV | 1330994.0 | Female | - | Adherent | bone_marrow | - | Leukemia | ALL | |
| ACH-000937 | PF382 | 909260.0 | Female | - | - | pleural_effusion | - | Leukemia | ALL | |
| ACH-000938 | NALM6 | 908158.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000942 | HPBALL | - | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000953 | SUPT1 | 909743.0 | Male | caucasian | - | pleural_effusion | Metastasis | Leukemia | ALL | |
| ACH-000960 | REH | 909696.0 | Female | north_african | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000964 | MOLT3 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Leukemia | ALL | |
| ACH-000981 | DND41 | 1297446.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-000983 | KCL22 | 1330931.0 | Female | - | - | pleural_effusion | - | Leukemia | LCML | |
| ACH-000995 | JURKAT | 998184.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-001036 | CMK115 | - | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Leukemia | LAML | |
| ACH-001106 | KOPN8 | 1330933.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | ALL | |
| ACH-001129 | MONOMAC1 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | LAML | |
| ACH-001484 | CI | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001485 | CII | - | Female | - | Loosely Adherent | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001520 | HG3 | - | Male | - | Mixed | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001573 | MOLM1 | - | Male | - | Suspension | bone_marrow | Metastasis | Leukemia | - | |
| ACH-001574 | MOLM14 | - | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001577 | MUTZ8 | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001613 | OCIAML4 | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001618 | OCIM2 | - | Unknown | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001634 | PGA1 | - | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Leukemia | - | |
| ACH-001647 | SHI1 | - | Male | - | Suspension | bone_marrow | Metastasis | Leukemia | - | |
| ACH-001656 | SKNO1 | - | Male | - | Suspension | bone_marrow | Metastasis | Leukemia | LAML | |
| ACH-001735 | SEMK2 | - | Female | - | not found | haematopoietic_and_lymphoid_tissue | - | Leukemia | - | |
| ACH-001736 | HB1119 | - | Unknown | - | not found | haematopoietic_and_lymphoid_tissue | - | Leukemia | - | |
| ACH-001737 | HSB2 | - | Unknown | - | Adherent | haematopoietic_and_lymphoid_tissue | - | Leukemia | - | |
| ACH-001993 | NALM16 | - | Female | - | Adherent | haematopoietic_and_lymphoid_tissue | - | Leukemia | - | |
| ACH-002059 | P30OHK | - | Female | - | Suspension | bone_marrow | Primary | Leukemia | ALL | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |