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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Rhabdoid cancer networks

    Data sets 1 Networks Single-sample 20

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Rhabdoid LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 20 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000096 G401 907299.0 Male caucasian Adherent kidney Primary Rhabdoid SARC
    Adj359 MBVis
    ACH-000160 BT12 - Female - Adherent soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-000172 TM87 - Unknown - not found pleural_effusion Metastasis Rhabdoid -
    Adj359 MBVis
    ACH-000201 A204 910784.0 Female - - soft_tissue Primary Rhabdoid SARC
    Adj359 MBVis
    ACH-000533 NCIH2004RT - Unknown - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-000597 TTC709 - Unknown - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-000607 KYM1 1240166.0 Male asian Mixed adherent and suspension soft_tissue Primary Rhabdoid SARC
    Adj359 MBVis
    ACH-001020 BT16 - Male - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001028 CHLA06ATRT - Female - not found central_nervous_system - Rhabdoid -
    Adj359 MBVis
    ACH-001031 CHLA266 - Female - Adherent soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001059 DL - Unknown - - soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001099 KD - Unknown - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001109 KPMRTRY - Male - - soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001128 MON - Male - - soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001200 STM9101 - Male - - lung Metastasis Rhabdoid -
    Adj359 MBVis
    ACH-001210 TTC1240 - Female - - central_nervous_system Metastasis Rhabdoid -
    Adj359 MBVis
    ACH-001211 TTC549 - Female - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001212 TTC642 - Female - not found soft_tissue - Rhabdoid -
    Adj359 MBVis
    ACH-001289 COGAR359 - Male - Suspension central_nervous_system - Rhabdoid -
    Adj359 MBVis
    ACH-001532 JMURTK2 - Female - Adherent central_nervous_system Metastasis Rhabdoid -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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