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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks
    v1.6.0 BONOBO networks
    v1.7.0 tcga-data-nf networks

    ACC cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    		 PPI
    		 Motif Expression Regulator nReg Genes Data Samples Precision
    		 Reference
    1 Adrenocortical carcinoma PANDA netZooR 0.9
    AdjCodeVis
    		 TF 644 29375 TCGA 79 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    		 Gender Race Stage
    		 Vital status Age
    		 Days to last follow up Tumor ID
    TCGA-OR-A5J5-01A MALE WHITE Stage III Dead 30 [Not Available] ACC
    TCGA-OR-A5K4-01A FEMALE WHITE Stage III Alive 64 528 ACC
    TCGA-OR-A5KU-01A FEMALE WHITE Stage II Alive 37 4673 ACC
    TCGA-OR-A5JK-01A MALE WHITE Stage IV Alive 49 1255 ACC
    TCGA-OR-A5J8-01A MALE WHITE Stage III Dead 66 [Not Available] ACC
    TCGA-OR-A5KW-01A FEMALE WHITE Stage III Alive 55 1525 ACC
    TCGA-OR-A5L9-01A FEMALE WHITE Stage II Alive 53 645 ACC
    TCGA-OR-A5KY-01A FEMALE WHITE Stage IV Dead 23 [Not Available] ACC
    TCGA-OR-A5J3-01A FEMALE WHITE Stage III Alive 23 1942 ACC
    TCGA-PA-A5YG-01A MALE WHITE Stage II Alive 51 470 ACC
    TCGA-OR-A5JW-01A MALE WHITE Stage II Alive 47 1924 ACC
    TCGA-OR-A5LN-01A FEMALE [Not Evaluated] Stage II Alive 31 1916 ACC
    TCGA-OR-A5JO-01A FEMALE WHITE Stage I Alive 26 889 ACC
    TCGA-OR-A5JD-01A FEMALE WHITE Stage II Alive 57 2782 ACC
    TCGA-PK-A5H8-01A MALE WHITE Stage II Alive 42 3240 ACC
    TCGA-OR-A5JJ-01A MALE WHITE Stage IV Alive 65 309 ACC
    TCGA-OR-A5JE-01A FEMALE WHITE Stage I Dead 17 [Not Available] ACC
    TCGA-OR-A5LT-01A MALE [Not Evaluated] Stage III Alive 57 365 ACC
    TCGA-OR-A5L4-01A FEMALE WHITE Stage III Alive 48 724 ACC
    TCGA-OR-A5LB-01A MALE WHITE Stage IV Dead 59 [Not Available] ACC
    TCGA-OR-A5JI-01A MALE WHITE Stage I Alive 22 1424 ACC
    TCGA-OR-A5JZ-01A MALE WHITE Stage II Alive 60 211 ACC
    TCGA-OR-A5LR-01A FEMALE [Not Evaluated] Stage II Alive 30 639 ACC
    TCGA-OR-A5LG-01A MALE WHITE Stage III Alive 46 1589 ACC
    TCGA-OR-A5K8-01A MALE WHITE Stage II Alive 39 504 ACC
    TCGA-OR-A5JS-01A FEMALE WHITE Stage II Alive 65 383 ACC
    TCGA-OR-A5JR-01A MALE WHITE Stage I Alive 45 3688 ACC
    TCGA-OR-A5JA-01A FEMALE WHITE Stage IV Dead 53 [Not Available] ACC
    TCGA-OR-A5JP-01A MALE WHITE Stage II Alive 40 149 ACC
    TCGA-OR-A5JQ-01A FEMALE WHITE Stage II Alive 26 674 ACC
    TCGA-PK-A5HA-01A MALE [Unknown] Stage I Alive 63 830 ACC
    TCGA-OR-A5LA-01A FEMALE WHITE Stage II Alive 52 487 ACC
    TCGA-PK-A5H9-01A FEMALE ASIAN Stage II Alive 27 307 ACC
    TCGA-OR-A5KO-01A FEMALE WHITE Stage IV Alive 39 1414 ACC
    TCGA-OR-A5JB-01A MALE WHITE Stage IV Dead 52 [Not Available] ACC
    TCGA-P6-A5OG-01A FEMALE WHITE Stage IV Dead 45 [Not Available] ACC
    TCGA-OR-A5KZ-01A MALE WHITE Stage II Dead 42 [Not Available] ACC
    TCGA-OR-A5J9-01A FEMALE WHITE Stage II Alive 22 1183 ACC
    TCGA-OR-A5LK-01A MALE [Not Evaluated] Stage II Alive 62 2222 ACC
    TCGA-OR-A5K2-01A FEMALE WHITE Stage III Dead 32 [Not Available] ACC
    TCGA-OR-A5L8-01A FEMALE WHITE Stage II Alive 36 555 ACC
    TCGA-OR-A5KV-01A FEMALE WHITE Stage III Alive 17 3659 ACC
    TCGA-OR-A5LH-01A FEMALE WHITE Stage II Dead 36 [Not Available] ACC
    TCGA-OR-A5J7-01A FEMALE WHITE Stage III Dead 30 [Not Available] ACC
    TCGA-OR-A5L6-01A MALE WHITE Stage II Alive 60 628 ACC
    TCGA-OR-A5K6-01A FEMALE WHITE Stage II Alive 56 1130 ACC
    TCGA-P6-A5OF-01A FEMALE WHITE Stage III Dead 55 [Not Available] ACC
    TCGA-OR-A5JY-01A FEMALE WHITE Stage IV Dead 68 [Not Available] ACC
    TCGA-OU-A5PI-01A FEMALE WHITE Stage IV Alive 53 709 ACC
    TCGA-OR-A5LP-01A FEMALE [Not Evaluated] Stage II Alive 37 1583 ACC
    TCGA-OR-A5LE-01A MALE WHITE Stage II Dead 14 [Not Available] ACC
    TCGA-OR-A5K1-01A MALE WHITE Stage II Alive 48 2723 ACC
    TCGA-OR-A5J6-01A FEMALE BLACK OR AFRICAN AMERICAN Stage II Alive 29 2428 ACC
    TCGA-OR-A5K5-01A FEMALE WHITE Stage III Alive 59 253 ACC
    TCGA-OR-A5JM-01A FEMALE WHITE Stage IV Dead 25 [Not Available] ACC
    TCGA-OR-A5LC-01A FEMALE WHITE Stage IV Dead 71 [Not Available] ACC
    TCGA-OR-A5J2-01A FEMALE WHITE Stage IV Dead 44 [Not Available] ACC
    TCGA-OR-A5J1-01A MALE WHITE Stage II Dead 58 [Not Available] ACC
    TCGA-OR-A5JV-01A MALE WHITE Stage II Alive 55 1541 ACC
    TCGA-OR-A5K9-01A FEMALE WHITE Stage II Dead 61 [Not Available] ACC
    TCGA-OR-A5K0-01A FEMALE WHITE Stage II Alive 69 1029 ACC
    TCGA-OR-A5JG-01A MALE WHITE Stage IV Dead 61 [Not Available] ACC
    TCGA-OR-A5LO-01A FEMALE [Not Evaluated] Stage II Alive 61 1949 ACC
    TCGA-OR-A5JF-01A FEMALE WHITE Stage II Alive 69 1259 ACC
    TCGA-OR-A5JX-01A MALE WHITE Stage III Alive 50 950 ACC
    TCGA-OR-A5KT-01A FEMALE WHITE Stage I Alive 44 2673 ACC
    TCGA-OR-A5LD-01A MALE WHITE Stage III Dead 52 [Not Available] ACC
    TCGA-OR-A5LJ-01A FEMALE WHITE Stage IV Dead 54 [Not Available] ACC
    TCGA-OR-A5KX-01A FEMALE WHITE Stage III Alive 25 1091 ACC
    TCGA-OR-A5LM-01A MALE [Not Evaluated] Stage II Alive 23 1858 ACC
    TCGA-PK-A5HB-01A MALE [Unknown] [Not Available] Alive 63 1293 ACC
    TCGA-OR-A5L3-01A FEMALE WHITE Stage I Alive 67 3897 ACC
    TCGA-OR-A5LS-01A FEMALE [Not Evaluated] Stage II Alive 34 882 ACC
    TCGA-OR-A5LL-01A FEMALE [Not Evaluated] Stage II Dead 75 [Not Available] ACC
    TCGA-OR-A5L5-01A FEMALE WHITE Stage I Alive 77 840 ACC
    TCGA-OR-A5K3-01A MALE WHITE Stage II Alive 53 2842 ACC
    TCGA-OR-A5JL-01A FEMALE WHITE Stage I Alive 36 670 ACC
    TCGA-OR-A5JC-01A MALE WHITE [Not Available] Dead 37 [Not Available] ACC
    TCGA-OR-A5JT-01A FEMALE WHITE Stage II Alive 65 488 ACC
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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