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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    DLBC cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 48 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-FA-A6HO-01A FEMALE ASIAN [Not Applicable] Alive 58.0 6 DLBC
    TCGA-G8-6909-01A MALE WHITE [Not Applicable] Alive 67.0 3227 DLBC
    TCGA-GR-7353-01A MALE WHITE [Not Applicable] Alive 36.0 2254 DLBC
    TCGA-FA-A6HN-01A MALE ASIAN [Not Applicable] Alive 73.0 6 DLBC
    TCGA-FF-8043-01A FEMALE ASIAN [Not Applicable] Alive 70.0 580 DLBC
    TCGA-G8-6326-01A MALE WHITE [Not Applicable] Alive 52.0 1162 DLBC
    TCGA-FF-8062-01A FEMALE ASIAN [Not Applicable] Alive 60.0 259 DLBC
    TCGA-G8-6324-01A FEMALE BLACK OR AFRICAN AMERICAN [Not Applicable] Dead 43.0 [Not Available] DLBC
    TCGA-GS-A9TW-01A FEMALE WHITE [Not Applicable] Alive 23.0 1245 DLBC
    TCGA-GR-A4D5-01A FEMALE WHITE [Not Applicable] Alive 46.0 751 DLBC
    TCGA-VB-A8QN-01A MALE WHITE [Not Applicable] Alive 55.0 0 DLBC
    TCGA-GR-A4D9-01B FEMALE WHITE [Not Applicable] Alive 66.0 1408 DLBC
    TCGA-FM-8000-01A FEMALE WHITE [Not Applicable] Alive 70.0 139 DLBC
    TCGA-FA-A4BB-01A MALE WHITE [Not Applicable] Alive 67.0 -10 DLBC
    TCGA-FF-8042-01A FEMALE ASIAN [Not Applicable] Alive 57.0 608 DLBC
    TCGA-FA-A82F-01A FEMALE ASIAN [Not Applicable] Alive 48.0 25 DLBC
    TCGA-G8-6914-01A MALE WHITE [Not Applicable] Alive 67.0 5616 DLBC
    TCGA-GS-A9U4-01A FEMALE WHITE [Not Applicable] Dead 27.0 [Not Available] DLBC
    TCGA-G8-6906-01A MALE WHITE [Not Applicable] Dead 58.0 [Not Available] DLBC
    TCGA-GS-A9TV-01A FEMALE WHITE [Not Applicable] Alive 40.0 380 DLBC
    TCGA-FF-A7CX-01A MALE ASIAN [Not Applicable] Alive 46.0 385 DLBC
    TCGA-GR-7351-01A FEMALE WHITE [Not Applicable] Alive 56.0 3872 DLBC
    TCGA-FA-A7DS-01A FEMALE ASIAN [Not Applicable] Alive 54.0 11 DLBC
    TCGA-FF-A7CR-01A MALE ASIAN [Not Applicable] Dead 61.0 [Not Available] DLBC
    TCGA-FF-A7CW-01A MALE ASIAN [Not Applicable] Alive 72.0 402 DLBC
    TCGA-RQ-AAAT-01A FEMALE WHITE [Not Applicable] Alive 63.0 17 DLBC
    TCGA-GS-A9U3-01A FEMALE WHITE [Not Applicable] Alive 77.0 2717 DLBC
    TCGA-GS-A9TZ-01A MALE WHITE [Not Applicable] Alive 51.0 415 DLBC
    TCGA-GR-A4D6-01A FEMALE ASIAN [Not Applicable] Alive 54.0 911 DLBC
    TCGA-FA-A86F-01A FEMALE WHITE [Not Applicable] Alive 64.0 0 DLBC
    TCGA-FA-A4XK-01A MALE ASIAN [Not Applicable] Alive 40.0 62 DLBC
    TCGA-FF-8046-01A MALE ASIAN [Not Applicable] Alive 51.0 377 DLBC
    TCGA-GS-A9TQ-01A FEMALE WHITE [Not Applicable] Alive 69.0 576 DLBC
    TCGA-GS-A9TU-01A MALE WHITE [Not Applicable] Alive 45.0 3414 DLBC
    TCGA-FA-8693-01A MALE WHITE [Not Applicable] Alive 75.0 35 DLBC
    TCGA-G8-6325-01A MALE WHITE [Not Applicable] Alive 69.0 1266 DLBC
    TCGA-RQ-A68N-01A MALE WHITE [Not Applicable] Alive 63.0 32 DLBC
    TCGA-RQ-A6JB-01A FEMALE WHITE [Not Applicable] Alive 62.0 1 DLBC
    TCGA-FA-A7Q1-01A FEMALE ASIAN [Not Applicable] Alive 61.0 22 DLBC
    TCGA-FF-A7CQ-01A MALE ASIAN [Not Applicable] Alive 74.0 298 DLBC
    TCGA-FF-8047-01A FEMALE ASIAN [Not Applicable] Alive 38.0 126 DLBC
    TCGA-G8-6907-01A FEMALE WHITE [Not Applicable] Dead 57.0 [Not Available] DLBC
    TCGA-FF-8061-01A MALE ASIAN [Not Applicable] Alive 42.0 433 DLBC
    TCGA-GR-A4D4-01A FEMALE WHITE [Not Applicable] Alive 57.0 812 DLBC
    TCGA-FF-8041-01A FEMALE ASIAN [Not Applicable] Alive 28.0 626 DLBC
    TCGA-GS-A9TY-01A FEMALE WHITE [Not Applicable] Alive 82.0 2616 DLBC
    TCGA-GS-A9TX-01A MALE WHITE [Not Applicable] Alive 37.0 887 DLBC
    TCGA-GS-A9TT-01A MALE WHITE [Not Applicable] Alive 70.0 844 DLBC
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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