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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    ESCA cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Esophageal carcinoma PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 161 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-JY-A93E-01A MALE WHITE Stage IIIA Alive - 550 ESCA
    TCGA-LN-A49P-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-VR-A8ER-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-L5-A4OG-01A FEMALE WHITE Stage I Alive - 102 ESCA
    TCGA-Z6-A8JD-01A MALE WHITE Stage IIB Alive - 20 ESCA
    TCGA-2H-A9GF-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-2H-A9GN-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-KH-A6WC-01A MALE WHITE Stage IA Alive - 189 ESCA
    TCGA-L5-A893-01A FEMALE WHITE Stage I Alive - 92 ESCA
    TCGA-LN-A8I0-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-IG-A97I-01A MALE WHITE Stage IIA Alive - -4 ESCA
    TCGA-IG-A97H-01A MALE ASIAN Stage IIA Alive - 13 ESCA
    TCGA-V5-AASV-01A MALE BLACK OR AFRICAN AMERICAN Stage IIB Alive - 258 ESCA
    TCGA-L5-A8NM-01A FEMALE WHITE Stage IIB Dead - [Not Available] ESCA
    TCGA-L5-A8NJ-01A MALE WHITE Stage III Alive - 501 ESCA
    TCGA-L5-A8NN-01A MALE WHITE Stage III Alive - 165 ESCA
    TCGA-L5-A43C-01A MALE WHITE [Not Available] Alive - 96 ESCA
    TCGA-L5-A8NF-01A MALE WHITE Stage IVA Dead - [Not Available] ESCA
    TCGA-2H-A9GH-01A MALE [Unknown] Stage IIB Dead - [Not Available] ESCA
    TCGA-LN-A9FP-01A FEMALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-JY-A6FD-01A FEMALE ASIAN Stage IIA Alive - 1638 ESCA
    TCGA-L5-A4OM-01A FEMALE WHITE Stage IA Alive - 124 ESCA
    TCGA-LN-A9FR-01A MALE ASIAN Stage IIB Alive - 0 ESCA
    TCGA-R6-A6XQ-01B MALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-V5-AASX-01A MALE WHITE [Not Available] Alive - 135 ESCA
    TCGA-LN-A49S-01A MALE ASIAN Stage IIA Alive - 4 ESCA
    TCGA-IG-A7DP-01A FEMALE WHITE Stage IIIA Alive - 34 ESCA
    TCGA-LN-A9FO-01A MALE ASIAN Stage IIA Alive - 4 ESCA
    TCGA-L5-A4OP-01A FEMALE WHITE Stage IA Alive - 218 ESCA
    TCGA-S8-A6BV-01A MALE WHITE Stage IIIA Alive - 267 ESCA
    TCGA-Z6-AAPN-01A MALE WHITE Stage IIA Alive - 18 ESCA
    TCGA-R6-A6DN-01B MALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-L5-A8NU-01A MALE WHITE Stage IIA Dead - [Not Available] ESCA
    TCGA-V5-A7RC-01B MALE BLACK OR AFRICAN AMERICAN [Not Available] Dead - [Not Available] ESCA
    TCGA-R6-A6KZ-01A MALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-IC-A6RF-01A FEMALE WHITE Stage IA Alive - 189 ESCA
    TCGA-L5-A8NG-01A MALE WHITE Stage III Alive - 1094 ESCA
    TCGA-ZR-A9CJ-01B MALE WHITE Stage IIIC Alive - 551 ESCA
    TCGA-L5-A88S-01A MALE WHITE Stage IB Alive - 211 ESCA
    TCGA-L5-A4OU-01A MALE WHITE Stage IIA Alive - 882 ESCA
    TCGA-IG-A3YA-01A MALE WHITE Stage IIIA Alive - 0 ESCA
    TCGA-2H-A9GI-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-L5-A88Z-01A FEMALE WHITE Stage IIA Alive - 225 ESCA
    TCGA-VR-A8EZ-01A MALE WHITE Stage IIIC Dead - [Not Available] ESCA
    TCGA-JY-A6FH-01A MALE WHITE Stage IIB Alive - 1098 ESCA
    TCGA-V5-AASW-01A MALE WHITE [Not Available] Alive - 248 ESCA
    TCGA-JY-A6FG-01A MALE WHITE Stage III Dead - [Not Available] ESCA
    TCGA-2H-A9GM-01A MALE [Unknown] Stage IIB Dead - [Not Available] ESCA
    TCGA-2H-A9GJ-01A MALE [Unknown] Stage I Dead - [Not Available] ESCA
    TCGA-VR-AA4G-01A FEMALE WHITE Stage IIIA Alive - 366 ESCA
    TCGA-L5-A88Y-01A MALE WHITE [Unknown] Alive - 11 ESCA
    TCGA-L5-A8NK-01A FEMALE WHITE Stage IIA Alive - 412 ESCA
    TCGA-R6-A6XG-01B MALE WHITE [Not Available] Alive - 900 ESCA
    TCGA-VR-A8EO-01A MALE WHITE Stage IIA Alive - 509 ESCA
    TCGA-2H-A9GL-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-IG-A6QS-01A MALE WHITE Stage IIB Alive - 4 ESCA
    TCGA-JY-A93C-01A MALE ASIAN Stage IIIB Alive - 705 ESCA
    TCGA-IG-A3YB-01A MALE WHITE Stage IIIA Alive - 0 ESCA
    TCGA-LN-A9FQ-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-L5-A88V-01A MALE WHITE Stage III Alive - 79 ESCA
    TCGA-R6-A8W5-01B MALE WHITE Stage IVA Dead - [Not Available] ESCA
    TCGA-L5-A88W-01A MALE WHITE Stage IIA Dead - [Not Available] ESCA
    TCGA-2H-A9GG-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-LN-A7HV-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-R6-A8WC-01A MALE WHITE [Not Available] Alive - 22 ESCA
    TCGA-VR-A8EP-01A MALE WHITE Stage IIIB Alive - 474 ESCA
    TCGA-R6-A8WG-01A MALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-LN-A7HW-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-IG-A51D-01A MALE WHITE Stage IIB Alive - 0 ESCA
    TCGA-LN-A4A4-01A MALE ASIAN Stage III Alive - 3 ESCA
    TCGA-L7-A6VZ-01A MALE WHITE Stage IIIC Alive - 266 ESCA
    TCGA-R6-A6DQ-01B FEMALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-V5-A7RE-01A MALE WHITE Stage IB Alive - 146 ESCA
    TCGA-L5-A4OW-01A FEMALE [Not Evaluated] Stage IIB Dead - [Not Available] ESCA
    TCGA-IG-A5S3-01A FEMALE WHITE Stage IIB Alive - 0 ESCA
    TCGA-XP-A8T6-01A MALE BLACK OR AFRICAN AMERICAN Stage IIB Dead - [Not Available] ESCA
    TCGA-LN-A5U5-01A MALE ASIAN Stage IV Alive - 5 ESCA
    TCGA-XP-A8T8-01A MALE BLACK OR AFRICAN AMERICAN Stage IIB Alive - 437 ESCA
    TCGA-LN-A49W-01A MALE ASIAN Stage III Alive - 2 ESCA
    TCGA-JY-A939-01A MALE WHITE Stage IIB Alive - 471 ESCA
    TCGA-L5-A8NI-01A MALE WHITE Stage III Dead - [Not Available] ESCA
    TCGA-LN-A5U6-01A MALE ASIAN Stage IIB Alive - 6 ESCA
    TCGA-LN-A49Y-01A MALE ASIAN Stage IIA Alive - 2 ESCA
    TCGA-Z6-A9VB-01A MALE WHITE Stage IIIA Alive - 15 ESCA
    TCGA-JY-A6FA-01A MALE ASIAN Stage IIB Dead - [Not Available] ESCA
    TCGA-L5-A43E-01A MALE WHITE Stage I Alive - 105 ESCA
    TCGA-L5-A4OE-01A MALE WHITE Stage IIIB Alive - 107 ESCA
    TCGA-LN-A7HX-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-2H-A9GQ-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-IG-A3YC-01A MALE WHITE Stage IIIA Alive - 0 ESCA
    TCGA-VR-A8EW-01A MALE ASIAN Stage IIIB Dead - [Not Available] ESCA
    TCGA-IG-A5B8-01A MALE WHITE Stage IB Dead - [Not Available] ESCA
    TCGA-VR-A8Q7-01A MALE WHITE Stage IIIA Alive - 1117 ESCA
    TCGA-Q9-A6FW-01A MALE WHITE Stage IIIB Alive - 115 ESCA
    TCGA-JY-A6FB-01A MALE WHITE Stage I Alive - 1837 ESCA
    TCGA-IC-A6RE-01A MALE WHITE Stage IIB Alive - 234 ESCA
    TCGA-RE-A7BO-01A FEMALE WHITE Stage IIB Dead - [Not Available] ESCA
    TCGA-LN-A7HY-01A MALE ASIAN Stage III Alive - 0 ESCA
    TCGA-L5-A8NE-01A MALE WHITE Stage IIB Alive - 1688 ESCA
    TCGA-L7-A56G-01A MALE BLACK OR AFRICAN AMERICAN [Not Available] Alive - 245 ESCA
    TCGA-VR-AA7I-01A MALE WHITE Stage III Dead - [Not Available] ESCA
    TCGA-S8-A6BW-01A MALE WHITE Stage IB Alive - 426 ESCA
    TCGA-LN-A4MQ-01A MALE ASIAN Stage III Alive - 3 ESCA
    TCGA-L5-A8NQ-01A MALE WHITE Stage IIA Dead - [Not Available] ESCA
    TCGA-L5-A4OH-01A MALE WHITE Stage I Alive - 593 ESCA
    TCGA-LN-A4A3-01A MALE ASIAN Stage III Alive - 2 ESCA
    TCGA-LN-A49U-01A MALE ASIAN Stage IIA Alive - 2 ESCA
    TCGA-VR-A8EQ-01A MALE WHITE Stage III Dead - [Not Available] ESCA
    TCGA-L5-A8NW-01A MALE WHITE [Discrepancy] Dead - [Not Available] ESCA
    TCGA-VR-A8ET-01A MALE WHITE Stage IIA Dead - [Not Available] ESCA
    TCGA-IG-A4QS-01A MALE WHITE Stage IIIB Alive - 8 ESCA
    TCGA-LN-A7HZ-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-IG-A50L-01A MALE ASIAN Stage IIIA Alive - 16 ESCA
    TCGA-L5-A43J-01A MALE WHITE Stage IIB Dead - [Not Available] ESCA
    TCGA-L5-A8NT-01A MALE WHITE Stage IIB Alive - 825 ESCA
    TCGA-LN-A49X-01A MALE ASIAN Stage IIA Alive - 3 ESCA
    TCGA-2H-A9GK-01A MALE [Unknown] Stage III Dead - [Not Available] ESCA
    TCGA-R6-A6L4-01A MALE WHITE [Not Available] Alive - 447 ESCA
    TCGA-VR-AA4D-01A MALE WHITE Stage IIB Alive - 1378 ESCA
    TCGA-Z6-A8JE-01A MALE WHITE Stage IIIA Alive - 0 ESCA
    TCGA-LN-A4A5-01A MALE ASIAN Stage IIA Alive - 3 ESCA
    TCGA-VR-A8EX-01A MALE [Unknown] Stage IVA Dead - [Not Available] ESCA
    TCGA-LN-A49M-01A MALE ASIAN Stage IIA Alive - 5 ESCA
    TCGA-JY-A93F-01A FEMALE WHITE Stage IB Alive - 535 ESCA
    TCGA-V5-A7RB-01A MALE [Unknown] [Unknown] Dead - [Not Available] ESCA
    TCGA-JY-A938-01A MALE WHITE Stage IIB Alive - 773 ESCA
    TCGA-L5-A8NV-01A MALE WHITE Stage IIA Dead - [Not Available] ESCA
    TCGA-L5-A4OX-01A MALE WHITE Stage IIB Dead - [Not Available] ESCA
    TCGA-L5-A8NR-01A FEMALE [Not Evaluated] Stage III Alive - 265 ESCA
    TCGA-2H-A9GO-01A MALE [Unknown] Stage IVA Dead - [Not Available] ESCA
    TCGA-IG-A625-01A MALE ASIAN Stage IIIB Alive - 11 ESCA
    TCGA-LN-A8HZ-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-L5-A4OT-01A MALE WHITE Stage IV Dead - [Not Available] ESCA
    TCGA-L5-A4OJ-01A FEMALE WHITE Stage I Alive - 195 ESCA
    TCGA-JY-A6FE-01A MALE WHITE Stage III Dead - [Not Available] ESCA
    TCGA-LN-A8I1-01A FEMALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-LN-A5U7-01A MALE ASIAN Stage IIA Alive - 36 ESCA
    TCGA-IG-A8O2-01A MALE ASIAN Stage IIIB Alive - 14 ESCA
    TCGA-L5-A4ON-01A MALE WHITE Stage IIB Dead - [Not Available] ESCA
    TCGA-2H-A9GR-01A MALE [Unknown] Stage IIA Dead - [Not Available] ESCA
    TCGA-IG-A4P3-01A MALE WHITE Stage IIB Alive - 1 ESCA
    TCGA-R6-A8W8-01B MALE WHITE [Not Available] Dead - [Not Available] ESCA
    TCGA-IG-A3I8-01A FEMALE WHITE Stage IIA Alive - 0 ESCA
    TCGA-IG-A3QL-01A MALE WHITE Stage IIA Alive - 0 ESCA
    TCGA-JY-A93D-01A MALE WHITE Stage IIIC Alive - 769 ESCA
    TCGA-L5-A8NH-01A MALE WHITE Stage IV Dead - [Not Available] ESCA
    TCGA-LN-A49O-01A MALE ASIAN Stage IIA Alive - 10 ESCA
    TCGA-LN-A4A1-01A MALE ASIAN Stage IIA Alive - 0 ESCA
    TCGA-VR-A8EY-01A FEMALE WHITE Stage IIA Alive - 724 ESCA
    TCGA-L5-A4OO-01A MALE WHITE Stage IIIC Alive - 101 ESCA
    TCGA-LN-A4A8-01A MALE ASIAN Stage IIA Alive - 2 ESCA
    TCGA-L5-A8NS-01A MALE WHITE Stage IIB Alive - 408 ESCA
    TCGA-L5-A4OI-01A MALE WHITE Stage IIIC Alive - 267 ESCA
    TCGA-VR-A8EU-01A MALE WHITE Stage IV Dead - [Not Available] ESCA
    TCGA-LN-A4A9-01A MALE ASIAN Stage IIA Alive - 2 ESCA
    TCGA-R6-A6Y0-01B MALE WHITE [Not Available] Alive - 1641 ESCA
    TCGA-L5-A4OS-01A FEMALE WHITE Stage IIB Alive - 935 ESCA
    TCGA-L5-A891-01A MALE WHITE [Unknown] Alive - 114 ESCA
    TCGA-L5-A88T-01A MALE WHITE Stage IIB Alive - 265 ESCA
    TCGA-M9-A5M8-01A MALE [Not Evaluated] Stage IIA Alive - 536 ESCA
    TCGA-L5-A8NL-01A MALE WHITE Stage III Alive - 402 ESCA
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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