GRAND

Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

#	Tissue	Tool	netZoo release	Network	PPI	Motif	Expression	TFs	Genes	Data	Samples	Precision	Reference
1	Kidney Chromophobe	PANDA	netZooR 0.9	Adj Code Vis				644	29375	TCGA	65	D

Variable description

This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

Sample	Gender	Race	Stage	Vital status	Age	Days to last follow up	Tumor ID
TCGA-KM-8438-01A	FEMALE	WHITE	Stage II	Alive	45	4335	KICH
TCGA-KL-8343-01A	MALE	WHITE	Stage III	Alive	72	1815	KICH
TCGA-KN-8419-01A	MALE	BLACK OR AFRICAN AMERICAN	Stage II	Alive	43	714	KICH
TCGA-KN-8434-01A	FEMALE	WHITE	Stage II	Alive	65	1125	KICH
TCGA-KL-8338-01A	MALE	WHITE	Stage III	Alive	51	2262	KICH
TCGA-KL-8328-01A	MALE	WHITE	Stage II	Alive	60	3127	KICH
TCGA-KM-8439-01A	MALE	WHITE	Stage I	Alive	30	247	KICH
TCGA-KN-8425-01A	MALE	WHITE	Stage I	Alive	53	2211	KICH
TCGA-KO-8414-01A	FEMALE	WHITE	Stage II	Alive	50	2368	KICH
TCGA-KL-8341-01A	MALE	ASIAN	Stage IV	Dead	41	[Not Available]	KICH
TCGA-KO-8406-01A	FEMALE	WHITE	Stage I	Alive	17	2404	KICH
TCGA-KN-8427-01A	MALE	WHITE	Stage IV	Alive	54	18	KICH
TCGA-KN-8431-01A	FEMALE	[Not Evaluated]	Stage II	Alive	35	-2	KICH
TCGA-KN-8435-01A	MALE	WHITE	Stage II	Alive	59	2727	KICH
TCGA-KO-8415-01A	FEMALE	WHITE	Stage I	Alive	44	1739	KICH
TCGA-KM-8639-01A	MALE	WHITE	Stage I	Alive	67	953	KICH
TCGA-KL-8332-01A	MALE	WHITE	Stage I	Alive	55	2582	KICH
TCGA-KL-8344-01A	MALE	WHITE	Stage III	Alive	51	876	KICH
TCGA-KL-8336-01A	FEMALE	WHITE	Stage IV	Dead	51	[Not Available]	KICH
TCGA-KM-8441-01A	FEMALE	WHITE	Stage I	Alive	61	114	KICH
TCGA-KO-8417-01A	FEMALE	WHITE	Stage I	Alive	30	1945	KICH
TCGA-KL-8337-01A	MALE	BLACK OR AFRICAN AMERICAN	Stage II	Alive	26	1364	KICH
TCGA-KN-8436-01A	MALE	WHITE	Stage II	Alive	62	637	KICH
TCGA-KL-8329-01A	FEMALE	ASIAN	Stage I	Alive	57	1345	KICH
TCGA-KN-8428-01A	MALE	WHITE	Stage II	Dead	71	[Not Available]	KICH
TCGA-KL-8333-01A	MALE	WHITE	Stage II	Alive	69	2648	KICH
TCGA-KL-8335-01A	MALE	WHITE	Stage III	Alive	67	1933	KICH
TCGA-KM-8443-01A	MALE	WHITE	Stage II	Alive	57	1128	KICH
TCGA-KO-8409-01A	MALE	WHITE	Stage II	Alive	69	2445	KICH
TCGA-KL-8339-01A	MALE	WHITE	Stage IV	Dead	67	[Not Available]	KICH
TCGA-KL-8324-01A	FEMALE	WHITE	Stage II	Alive	67	4311	KICH
TCGA-KL-8327-01A	FEMALE	WHITE	Stage I	Alive	46	3553	KICH
TCGA-KN-8424-01A	FEMALE	WHITE	Stage I	Alive	42	1983	KICH
TCGA-KO-8407-01A	MALE	WHITE	Stage II	Alive	42	2820	KICH
TCGA-KO-8404-01A	MALE	WHITE	Stage IV	Dead	78	[Not Available]	KICH
TCGA-KL-8342-01A	FEMALE	WHITE	Stage II	Alive	45	1835	KICH
TCGA-KN-8429-01A	FEMALE	WHITE	Stage III	Alive	38	2064	KICH
TCGA-KO-8403-01A	MALE	WHITE	Stage I	Alive	49	2339	KICH
TCGA-KM-8440-01A	MALE	BLACK OR AFRICAN AMERICAN	Stage III	Alive	37	994	KICH
TCGA-KL-8330-01A	FEMALE	BLACK OR AFRICAN AMERICAN	Stage II	Alive	44	3067	KICH
TCGA-KM-8477-01A	MALE	WHITE	Stage I	Alive	56	1553	KICH
TCGA-KO-8411-01A	MALE	WHITE	Stage I	Alive	58	3141	KICH
TCGA-KL-8323-01A	FEMALE	WHITE	Stage III	Dead	57	[Not Available]	KICH
TCGA-KN-8432-01A	FEMALE	WHITE	Stage II	Alive	86	76	KICH
TCGA-KL-8340-01A	MALE	WHITE	Stage II	Alive	34	2024	KICH
TCGA-KO-8416-01A	MALE	WHITE	Stage III	Alive	41	1873	KICH
TCGA-KO-8405-01A	MALE	WHITE	Stage III	Alive	29	2279	KICH
TCGA-KN-8421-01A	FEMALE	WHITE	Stage II	Alive	47	2674	KICH
TCGA-KL-8334-01A	FEMALE	WHITE	Stage III	Alive	37	2536	KICH
TCGA-KN-8418-01A	FEMALE	WHITE	Stage II	Alive	41	3474	KICH
TCGA-KL-8325-01A	FEMALE	WHITE	Stage II	Dead	56	[Not Available]	KICH
TCGA-KN-8423-01A	MALE	WHITE	Stage I	Alive	44	788	KICH
TCGA-KN-8430-01A	MALE	WHITE	Stage I	Dead	75	[Not Available]	KICH
TCGA-KN-8437-01A	FEMALE	WHITE	Stage I	Alive	42	2304	KICH
TCGA-KO-8410-01A	FEMALE	WHITE	Stage I	Alive	74	2670	KICH
TCGA-KN-8426-01A	MALE	WHITE	Stage IV	Alive	50	108	KICH
TCGA-KN-8433-01A	FEMALE	WHITE	Stage III	Alive	46	341	KICH
TCGA-KL-8331-01A	FEMALE	WHITE	Stage II	Alive	48	3010	KICH
TCGA-KM-8442-01A	MALE	[Unknown]	Stage II	Alive	38	674	KICH
TCGA-KO-8413-01A	MALE	WHITE	Stage I	Alive	46	2619	KICH
TCGA-KL-8346-01A	MALE	WHITE	Stage II	Alive	62	1536	KICH
TCGA-KL-8326-01A	MALE	WHITE	Stage III	Alive	69	3322	KICH
TCGA-KO-8408-01A	MALE	WHITE	Stage III	Dead	47	[Not Available]	KICH
TCGA-KM-8476-01A	MALE	WHITE	Stage I	Alive	47	2590	KICH
TCGA-KL-8345-01A	MALE	WHITE	Stage III	Alive	75	1383	KICH
Sample	Gender	Race	Stage	Status	Age	Days to follow up	Tumor ID

KICH cancer networks

Networks

Tool description

Phenotypic information TCGA

Variable description