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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    KICH cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Kidney Chromophobe PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 65 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-KM-8438-01A FEMALE WHITE Stage II Alive 45 4335 KICH
    TCGA-KL-8343-01A MALE WHITE Stage III Alive 72 1815 KICH
    TCGA-KN-8419-01A MALE BLACK OR AFRICAN AMERICAN Stage II Alive 43 714 KICH
    TCGA-KN-8434-01A FEMALE WHITE Stage II Alive 65 1125 KICH
    TCGA-KL-8338-01A MALE WHITE Stage III Alive 51 2262 KICH
    TCGA-KL-8328-01A MALE WHITE Stage II Alive 60 3127 KICH
    TCGA-KM-8439-01A MALE WHITE Stage I Alive 30 247 KICH
    TCGA-KN-8425-01A MALE WHITE Stage I Alive 53 2211 KICH
    TCGA-KO-8414-01A FEMALE WHITE Stage II Alive 50 2368 KICH
    TCGA-KL-8341-01A MALE ASIAN Stage IV Dead 41 [Not Available] KICH
    TCGA-KO-8406-01A FEMALE WHITE Stage I Alive 17 2404 KICH
    TCGA-KN-8427-01A MALE WHITE Stage IV Alive 54 18 KICH
    TCGA-KN-8431-01A FEMALE [Not Evaluated] Stage II Alive 35 -2 KICH
    TCGA-KN-8435-01A MALE WHITE Stage II Alive 59 2727 KICH
    TCGA-KO-8415-01A FEMALE WHITE Stage I Alive 44 1739 KICH
    TCGA-KM-8639-01A MALE WHITE Stage I Alive 67 953 KICH
    TCGA-KL-8332-01A MALE WHITE Stage I Alive 55 2582 KICH
    TCGA-KL-8344-01A MALE WHITE Stage III Alive 51 876 KICH
    TCGA-KL-8336-01A FEMALE WHITE Stage IV Dead 51 [Not Available] KICH
    TCGA-KM-8441-01A FEMALE WHITE Stage I Alive 61 114 KICH
    TCGA-KO-8417-01A FEMALE WHITE Stage I Alive 30 1945 KICH
    TCGA-KL-8337-01A MALE BLACK OR AFRICAN AMERICAN Stage II Alive 26 1364 KICH
    TCGA-KN-8436-01A MALE WHITE Stage II Alive 62 637 KICH
    TCGA-KL-8329-01A FEMALE ASIAN Stage I Alive 57 1345 KICH
    TCGA-KN-8428-01A MALE WHITE Stage II Dead 71 [Not Available] KICH
    TCGA-KL-8333-01A MALE WHITE Stage II Alive 69 2648 KICH
    TCGA-KL-8335-01A MALE WHITE Stage III Alive 67 1933 KICH
    TCGA-KM-8443-01A MALE WHITE Stage II Alive 57 1128 KICH
    TCGA-KO-8409-01A MALE WHITE Stage II Alive 69 2445 KICH
    TCGA-KL-8339-01A MALE WHITE Stage IV Dead 67 [Not Available] KICH
    TCGA-KL-8324-01A FEMALE WHITE Stage II Alive 67 4311 KICH
    TCGA-KL-8327-01A FEMALE WHITE Stage I Alive 46 3553 KICH
    TCGA-KN-8424-01A FEMALE WHITE Stage I Alive 42 1983 KICH
    TCGA-KO-8407-01A MALE WHITE Stage II Alive 42 2820 KICH
    TCGA-KO-8404-01A MALE WHITE Stage IV Dead 78 [Not Available] KICH
    TCGA-KL-8342-01A FEMALE WHITE Stage II Alive 45 1835 KICH
    TCGA-KN-8429-01A FEMALE WHITE Stage III Alive 38 2064 KICH
    TCGA-KO-8403-01A MALE WHITE Stage I Alive 49 2339 KICH
    TCGA-KM-8440-01A MALE BLACK OR AFRICAN AMERICAN Stage III Alive 37 994 KICH
    TCGA-KL-8330-01A FEMALE BLACK OR AFRICAN AMERICAN Stage II Alive 44 3067 KICH
    TCGA-KM-8477-01A MALE WHITE Stage I Alive 56 1553 KICH
    TCGA-KO-8411-01A MALE WHITE Stage I Alive 58 3141 KICH
    TCGA-KL-8323-01A FEMALE WHITE Stage III Dead 57 [Not Available] KICH
    TCGA-KN-8432-01A FEMALE WHITE Stage II Alive 86 76 KICH
    TCGA-KL-8340-01A MALE WHITE Stage II Alive 34 2024 KICH
    TCGA-KO-8416-01A MALE WHITE Stage III Alive 41 1873 KICH
    TCGA-KO-8405-01A MALE WHITE Stage III Alive 29 2279 KICH
    TCGA-KN-8421-01A FEMALE WHITE Stage II Alive 47 2674 KICH
    TCGA-KL-8334-01A FEMALE WHITE Stage III Alive 37 2536 KICH
    TCGA-KN-8418-01A FEMALE WHITE Stage II Alive 41 3474 KICH
    TCGA-KL-8325-01A FEMALE WHITE Stage II Dead 56 [Not Available] KICH
    TCGA-KN-8423-01A MALE WHITE Stage I Alive 44 788 KICH
    TCGA-KN-8430-01A MALE WHITE Stage I Dead 75 [Not Available] KICH
    TCGA-KN-8437-01A FEMALE WHITE Stage I Alive 42 2304 KICH
    TCGA-KO-8410-01A FEMALE WHITE Stage I Alive 74 2670 KICH
    TCGA-KN-8426-01A MALE WHITE Stage IV Alive 50 108 KICH
    TCGA-KN-8433-01A FEMALE WHITE Stage III Alive 46 341 KICH
    TCGA-KL-8331-01A FEMALE WHITE Stage II Alive 48 3010 KICH
    TCGA-KM-8442-01A MALE [Unknown] Stage II Alive 38 674 KICH
    TCGA-KO-8413-01A MALE WHITE Stage I Alive 46 2619 KICH
    TCGA-KL-8346-01A MALE WHITE Stage II Alive 62 1536 KICH
    TCGA-KL-8326-01A MALE WHITE Stage III Alive 69 3322 KICH
    TCGA-KO-8408-01A MALE WHITE Stage III Dead 47 [Not Available] KICH
    TCGA-KM-8476-01A MALE WHITE Stage I Alive 47 2590 KICH
    TCGA-KL-8345-01A MALE WHITE Stage III Alive 75 1383 KICH
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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