To get the full list of phenotypic variables, please check the menu below.
Tool description
Like PANDA, OTTER reconstructs a gene regulatory network from the TF PPI, TF DNA binding motif, and gene expression samples. OTTER formulates network inference as a well-defined objective function that optimizes the graph matching of the three network priors. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression | TFs | Genes | Data | Samples | Precision |
Ref. |
|---|
Variable description
This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.
| Sample |
Gender | Race | Ethnicity | Weight |
Height |
Anatomic location |
Stage |
Diagnosis | Vital status | Time |
Age |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sample | Gender | Race | Ethnicity | Weight | Height | Anatomic location | Stage | Diagnosis | Vital status | Time to event | Age |