GRAND

Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

#	Tissue	Tool	netZoo release	Network	PPI	Motif	Expression	Regulator	nReg	Genes	Data	Samples	Precision	Reference
1	Mesothelioma	PANDA	netZooR 0.9	Adj Code Vis				TF	644	29375	TCGA	86	D

Variable description

This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

Sample	Gender	Race	Stage	Vital status	Age	Days to last follow up	Tumor ID
TCGA-MQ-A6BQ-01A	MALE	WHITE	Stage II	Alive	58	1316	MESO
TCGA-MQ-A4LM-01A	MALE	WHITE	Stage III	Dead	67	[Not Available]	MESO
TCGA-ZN-A9VQ-01A	MALE	WHITE	Stage I	Alive	61	499	MESO
TCGA-3H-AB3S-01A	MALE	WHITE	Stage II	Dead	69	[Not Available]	MESO
TCGA-ZN-A9VU-01A	MALE	WHITE	Stage II	Alive	70	739	MESO
TCGA-3U-A98G-01A	MALE	WHITE	Stage IV	Alive	71	501	MESO
TCGA-SC-A6LP-01A	MALE	WHITE	Stage II	Dead	58	[Not Available]	MESO
TCGA-3U-A98H-01A	MALE	WHITE	Stage IV	Alive	57	1150	MESO
TCGA-ZN-A9VS-01A	MALE	WHITE	Stage III	Alive	67	1025	MESO
TCGA-3H-AB3T-01A	MALE	WHITE	Stage I	Dead	79	[Not Available]	MESO
TCGA-YS-A95C-01A	MALE	WHITE	Stage III	Dead	54	[Not Available]	MESO
TCGA-SC-A6LQ-01A	FEMALE	WHITE	Stage III	Dead	60	[Not Available]	MESO
TCGA-TS-A8AI-01A	MALE	WHITE	Stage IV	Dead	58	[Not Available]	MESO
TCGA-TS-A7OZ-01A	MALE	WHITE	Stage III	Dead	67	[Not Available]	MESO
TCGA-TS-A7OU-01B	MALE	WHITE	Stage IV	Dead	56	[Not Available]	MESO
TCGA-ZN-A9VW-01A	MALE	WHITE	Stage IV	Dead	61	[Not Available]	MESO
TCGA-LK-A4O6-01A	FEMALE	WHITE	Stage III	Alive	66	49	MESO
TCGA-UD-AABZ-01A	MALE	WHITE	Stage II	Dead	46	[Not Available]	MESO
TCGA-ZN-A9VO-01A	MALE	WHITE	Stage IV	Alive	36	261	MESO
TCGA-TS-A8AF-01A	MALE	WHITE	Stage III	Dead	69	[Not Available]	MESO
TCGA-MQ-A4LJ-01A	MALE	WHITE	Stage III	Dead	53	[Not Available]	MESO
TCGA-3H-AB3X-01A	MALE	WHITE	Stage III	Alive	62	803	MESO
TCGA-MQ-A4LC-01A	MALE	WHITE	Stage II	Dead	54	[Not Available]	MESO
TCGA-TS-A8AS-01A	MALE	WHITE	Stage IA	Dead	77	[Not Available]	MESO
TCGA-TS-A7P3-01A	MALE	WHITE	Stage III	Dead	57	[Not Available]	MESO
TCGA-TS-A7P6-01A	MALE	WHITE	Stage III	Dead	61	[Not Available]	MESO
TCGA-MQ-A6BS-01A	MALE	WHITE	Stage II	Alive	55	414	MESO
TCGA-SC-AA5Z-01A	MALE	WHITE	Stage IV	Alive	54	484	MESO
TCGA-UT-A97Y-01A	FEMALE	WHITE	Stage I	Dead	81	[Not Available]	MESO
TCGA-SH-A9CU-01A	MALE	WHITE	Stage IV	Alive	60	285	MESO
TCGA-UD-AAC1-01A	FEMALE	WHITE	Stage III	Dead	71	[Not Available]	MESO
TCGA-ZN-A9VV-01A	MALE	WHITE	Stage III	Alive	68	1299	MESO
TCGA-SH-A9CT-01A	MALE	WHITE	Stage II	Alive	67	256	MESO
TCGA-SH-A7BC-01A	MALE	WHITE	Stage III	Dead	66	[Not Available]	MESO
TCGA-3H-AB3K-01A	MALE	WHITE	Stage II	Dead	64	[Not Available]	MESO
TCGA-3H-AB3U-01A	MALE	WHITE	Stage III	Dead	71	[Not Available]	MESO
TCGA-YS-AA4M-01A	MALE	WHITE	Stage IV	Dead	66	[Not Available]	MESO
TCGA-NQ-A638-01A	MALE	WHITE	Stage II	Alive	66	-8	MESO
TCGA-YS-A95B-01A	FEMALE	WHITE	Stage IV	Dead	28	[Not Available]	MESO
TCGA-LK-A4NW-01A	MALE	WHITE	Stage IV	Dead	60	[Not Available]	MESO
TCGA-MQ-A6BL-01A	MALE	WHITE	Stage II	Dead	78	[Not Available]	MESO
TCGA-MQ-A4LV-01A	MALE	WHITE	Stage III	Dead	63	[Not Available]	MESO
TCGA-UT-A88C-01B	MALE	WHITE	Stage III	Alive	62	577	MESO
TCGA-LK-A4O5-01A	FEMALE	WHITE	Stage III	Alive	68	371	MESO
TCGA-3H-AB3O-01A	MALE	WHITE	Stage III	Dead	58	[Not Available]	MESO
TCGA-3U-A98E-01A	FEMALE	WHITE	Stage IV	Alive	71	1426	MESO
TCGA-TS-A7P0-01A	MALE	WHITE	Stage III	Dead	42	[Not Available]	MESO
TCGA-3U-A98F-01A	MALE	WHITE	Stage III	Alive	73	463	MESO
TCGA-UD-AAC6-01A	MALE	WHITE	Stage II	Dead	67	[Not Available]	MESO
TCGA-UT-A88G-01B	MALE	WHITE	Stage III	Dead	73	[Not Available]	MESO
TCGA-TS-A8AV-01A	MALE	WHITE	Stage III	Dead	55	[Not Available]	MESO
TCGA-UD-AABY-01A	MALE	WHITE	Stage III	Dead	50	[Not Available]	MESO
TCGA-TS-A8AY-01A	FEMALE	BLACK OR AFRICAN AMERICAN	Stage III	Dead	48	[Not Available]	MESO
TCGA-UD-AAC5-01A	MALE	WHITE	Stage I	Dead	66	[Not Available]	MESO
TCGA-MQ-A4KX-01A	MALE	WHITE	Stage I	Dead	55	[Not Available]	MESO
TCGA-UT-A88D-01B	MALE	WHITE	Stage II	Alive	66	444	MESO
TCGA-LK-A4O4-01A	MALE	WHITE	Stage III	Dead	69	[Not Available]	MESO
TCGA-3H-AB3M-01A	FEMALE	WHITE	Stage III	Dead	53	[Not Available]	MESO
TCGA-UD-AAC7-01A	MALE	WHITE	Stage II	Dead	47	[Not Available]	MESO
TCGA-SC-A6LR-01A	MALE	WHITE	Stage III	Alive	73	524	MESO
TCGA-MQ-A6BN-01A	FEMALE	WHITE	Stage III	Dead	73	[Not Available]	MESO
TCGA-3U-A98I-01A	MALE	WHITE	Stage IV	Alive	68	439	MESO
TCGA-SC-A6LM-01A	FEMALE	WHITE	Stage IV	Dead	64	[Not Available]	MESO
TCGA-MQ-A4LP-01A	MALE	WHITE	Stage III	Dead	67	[Not Available]	MESO
TCGA-SC-A6LN-01A	MALE	ASIAN	Stage III	Alive	76	200	MESO
TCGA-3U-A98D-01A	MALE	WHITE	Stage III	Alive	80	125	MESO
TCGA-NQ-A57I-01A	MALE	WHITE	Stage IB	Alive	71	7	MESO
TCGA-3H-AB3L-01A	MALE	WHITE	Stage III	Dead	60	[Not Available]	MESO
TCGA-TS-A7P1-01A	MALE	WHITE	Stage I	Dead	52	[Not Available]	MESO
TCGA-TS-A7P7-01A	MALE	WHITE	Stage III	Dead	62	[Not Available]	MESO
TCGA-LK-A4O0-01A	MALE	WHITE	Stage IA	Dead	81	[Not Available]	MESO
TCGA-LK-A4O7-01A	MALE	WHITE	Stage III	Alive	64	108	MESO
TCGA-MQ-A4LI-01A	FEMALE	WHITE	Stage II	Dead	60	[Not Available]	MESO
TCGA-TS-A7P8-01A	MALE	WHITE	Stage III	Dead	80	[Not Available]	MESO
TCGA-ZN-A9VP-01A	MALE	WHITE	Stage III	Alive	51	228	MESO
TCGA-SH-A7BD-01A	MALE	WHITE	Stage IV	Dead	68	[Not Available]	MESO
TCGA-UT-A88E-01B	MALE	WHITE	Stage I	Dead	74	[Not Available]	MESO
TCGA-TS-A7OY-01A	MALE	WHITE	Stage IV	Dead	62	[Not Available]	MESO
TCGA-UD-AAC4-01A	MALE	WHITE	Stage III	Dead	65	[Not Available]	MESO
TCGA-TS-A7PB-01A	MALE	WHITE	Stage III	Dead	62	[Not Available]	MESO
TCGA-XT-AASU-01A	MALE	WHITE	Stage III	Dead	60	[Not Available]	MESO
TCGA-LK-A4O2-01A	FEMALE	WHITE	Stage III	Dead	56	[Not Available]	MESO
TCGA-3U-A98J-01A	MALE	WHITE	Stage III	Alive	55	485	MESO
TCGA-MQ-A6BR-01A	FEMALE	WHITE	Stage III	Alive	55	1575	MESO
TCGA-LK-A4NZ-01A	MALE	WHITE	Stage II	Dead	75	[Not Available]	MESO
TCGA-SH-A7BH-01A	FEMALE	WHITE	Stage III	Dead	65	[Not Available]	MESO
Sample	Gender	Race	Stage	Status	Age	Days to follow up	Tumor ID

MESO cancer networks

Networks

Tool description

Phenotypic information TCGA

Variable description