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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    MESO cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Mesothelioma PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 86 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-MQ-A6BQ-01A MALE WHITE Stage II Alive 58 1316 MESO
    TCGA-MQ-A4LM-01A MALE WHITE Stage III Dead 67 [Not Available] MESO
    TCGA-ZN-A9VQ-01A MALE WHITE Stage I Alive 61 499 MESO
    TCGA-3H-AB3S-01A MALE WHITE Stage II Dead 69 [Not Available] MESO
    TCGA-ZN-A9VU-01A MALE WHITE Stage II Alive 70 739 MESO
    TCGA-3U-A98G-01A MALE WHITE Stage IV Alive 71 501 MESO
    TCGA-SC-A6LP-01A MALE WHITE Stage II Dead 58 [Not Available] MESO
    TCGA-3U-A98H-01A MALE WHITE Stage IV Alive 57 1150 MESO
    TCGA-ZN-A9VS-01A MALE WHITE Stage III Alive 67 1025 MESO
    TCGA-3H-AB3T-01A MALE WHITE Stage I Dead 79 [Not Available] MESO
    TCGA-YS-A95C-01A MALE WHITE Stage III Dead 54 [Not Available] MESO
    TCGA-SC-A6LQ-01A FEMALE WHITE Stage III Dead 60 [Not Available] MESO
    TCGA-TS-A8AI-01A MALE WHITE Stage IV Dead 58 [Not Available] MESO
    TCGA-TS-A7OZ-01A MALE WHITE Stage III Dead 67 [Not Available] MESO
    TCGA-TS-A7OU-01B MALE WHITE Stage IV Dead 56 [Not Available] MESO
    TCGA-ZN-A9VW-01A MALE WHITE Stage IV Dead 61 [Not Available] MESO
    TCGA-LK-A4O6-01A FEMALE WHITE Stage III Alive 66 49 MESO
    TCGA-UD-AABZ-01A MALE WHITE Stage II Dead 46 [Not Available] MESO
    TCGA-ZN-A9VO-01A MALE WHITE Stage IV Alive 36 261 MESO
    TCGA-TS-A8AF-01A MALE WHITE Stage III Dead 69 [Not Available] MESO
    TCGA-MQ-A4LJ-01A MALE WHITE Stage III Dead 53 [Not Available] MESO
    TCGA-3H-AB3X-01A MALE WHITE Stage III Alive 62 803 MESO
    TCGA-MQ-A4LC-01A MALE WHITE Stage II Dead 54 [Not Available] MESO
    TCGA-TS-A8AS-01A MALE WHITE Stage IA Dead 77 [Not Available] MESO
    TCGA-TS-A7P3-01A MALE WHITE Stage III Dead 57 [Not Available] MESO
    TCGA-TS-A7P6-01A MALE WHITE Stage III Dead 61 [Not Available] MESO
    TCGA-MQ-A6BS-01A MALE WHITE Stage II Alive 55 414 MESO
    TCGA-SC-AA5Z-01A MALE WHITE Stage IV Alive 54 484 MESO
    TCGA-UT-A97Y-01A FEMALE WHITE Stage I Dead 81 [Not Available] MESO
    TCGA-SH-A9CU-01A MALE WHITE Stage IV Alive 60 285 MESO
    TCGA-UD-AAC1-01A FEMALE WHITE Stage III Dead 71 [Not Available] MESO
    TCGA-ZN-A9VV-01A MALE WHITE Stage III Alive 68 1299 MESO
    TCGA-SH-A9CT-01A MALE WHITE Stage II Alive 67 256 MESO
    TCGA-SH-A7BC-01A MALE WHITE Stage III Dead 66 [Not Available] MESO
    TCGA-3H-AB3K-01A MALE WHITE Stage II Dead 64 [Not Available] MESO
    TCGA-3H-AB3U-01A MALE WHITE Stage III Dead 71 [Not Available] MESO
    TCGA-YS-AA4M-01A MALE WHITE Stage IV Dead 66 [Not Available] MESO
    TCGA-NQ-A638-01A MALE WHITE Stage II Alive 66 -8 MESO
    TCGA-YS-A95B-01A FEMALE WHITE Stage IV Dead 28 [Not Available] MESO
    TCGA-LK-A4NW-01A MALE WHITE Stage IV Dead 60 [Not Available] MESO
    TCGA-MQ-A6BL-01A MALE WHITE Stage II Dead 78 [Not Available] MESO
    TCGA-MQ-A4LV-01A MALE WHITE Stage III Dead 63 [Not Available] MESO
    TCGA-UT-A88C-01B MALE WHITE Stage III Alive 62 577 MESO
    TCGA-LK-A4O5-01A FEMALE WHITE Stage III Alive 68 371 MESO
    TCGA-3H-AB3O-01A MALE WHITE Stage III Dead 58 [Not Available] MESO
    TCGA-3U-A98E-01A FEMALE WHITE Stage IV Alive 71 1426 MESO
    TCGA-TS-A7P0-01A MALE WHITE Stage III Dead 42 [Not Available] MESO
    TCGA-3U-A98F-01A MALE WHITE Stage III Alive 73 463 MESO
    TCGA-UD-AAC6-01A MALE WHITE Stage II Dead 67 [Not Available] MESO
    TCGA-UT-A88G-01B MALE WHITE Stage III Dead 73 [Not Available] MESO
    TCGA-TS-A8AV-01A MALE WHITE Stage III Dead 55 [Not Available] MESO
    TCGA-UD-AABY-01A MALE WHITE Stage III Dead 50 [Not Available] MESO
    TCGA-TS-A8AY-01A FEMALE BLACK OR AFRICAN AMERICAN Stage III Dead 48 [Not Available] MESO
    TCGA-UD-AAC5-01A MALE WHITE Stage I Dead 66 [Not Available] MESO
    TCGA-MQ-A4KX-01A MALE WHITE Stage I Dead 55 [Not Available] MESO
    TCGA-UT-A88D-01B MALE WHITE Stage II Alive 66 444 MESO
    TCGA-LK-A4O4-01A MALE WHITE Stage III Dead 69 [Not Available] MESO
    TCGA-3H-AB3M-01A FEMALE WHITE Stage III Dead 53 [Not Available] MESO
    TCGA-UD-AAC7-01A MALE WHITE Stage II Dead 47 [Not Available] MESO
    TCGA-SC-A6LR-01A MALE WHITE Stage III Alive 73 524 MESO
    TCGA-MQ-A6BN-01A FEMALE WHITE Stage III Dead 73 [Not Available] MESO
    TCGA-3U-A98I-01A MALE WHITE Stage IV Alive 68 439 MESO
    TCGA-SC-A6LM-01A FEMALE WHITE Stage IV Dead 64 [Not Available] MESO
    TCGA-MQ-A4LP-01A MALE WHITE Stage III Dead 67 [Not Available] MESO
    TCGA-SC-A6LN-01A MALE ASIAN Stage III Alive 76 200 MESO
    TCGA-3U-A98D-01A MALE WHITE Stage III Alive 80 125 MESO
    TCGA-NQ-A57I-01A MALE WHITE Stage IB Alive 71 7 MESO
    TCGA-3H-AB3L-01A MALE WHITE Stage III Dead 60 [Not Available] MESO
    TCGA-TS-A7P1-01A MALE WHITE Stage I Dead 52 [Not Available] MESO
    TCGA-TS-A7P7-01A MALE WHITE Stage III Dead 62 [Not Available] MESO
    TCGA-LK-A4O0-01A MALE WHITE Stage IA Dead 81 [Not Available] MESO
    TCGA-LK-A4O7-01A MALE WHITE Stage III Alive 64 108 MESO
    TCGA-MQ-A4LI-01A FEMALE WHITE Stage II Dead 60 [Not Available] MESO
    TCGA-TS-A7P8-01A MALE WHITE Stage III Dead 80 [Not Available] MESO
    TCGA-ZN-A9VP-01A MALE WHITE Stage III Alive 51 228 MESO
    TCGA-SH-A7BD-01A MALE WHITE Stage IV Dead 68 [Not Available] MESO
    TCGA-UT-A88E-01B MALE WHITE Stage I Dead 74 [Not Available] MESO
    TCGA-TS-A7OY-01A MALE WHITE Stage IV Dead 62 [Not Available] MESO
    TCGA-UD-AAC4-01A MALE WHITE Stage III Dead 65 [Not Available] MESO
    TCGA-TS-A7PB-01A MALE WHITE Stage III Dead 62 [Not Available] MESO
    TCGA-XT-AASU-01A MALE WHITE Stage III Dead 60 [Not Available] MESO
    TCGA-LK-A4O2-01A FEMALE WHITE Stage III Dead 56 [Not Available] MESO
    TCGA-3U-A98J-01A MALE WHITE Stage III Alive 55 485 MESO
    TCGA-MQ-A6BR-01A FEMALE WHITE Stage III Alive 55 1575 MESO
    TCGA-LK-A4NZ-01A MALE WHITE Stage II Dead 75 [Not Available] MESO
    TCGA-SH-A7BH-01A FEMALE WHITE Stage III Dead 65 [Not Available] MESO
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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