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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    SKCM cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Skin Cutaneous Melanoma PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 103 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-FR-A728-01A FEMALE WHITE Stage IIIB Alive - 247 SKCM
    TCGA-BF-A1PZ-01A FEMALE WHITE Stage IIB Alive - 12 SKCM
    TCGA-BF-AAP7-01A FEMALE WHITE Stage IIC Alive - 15 SKCM
    TCGA-EB-A1NK-01A MALE WHITE Stage IIC Alive - 16 SKCM
    TCGA-XV-A9VZ-01A FEMALE WHITE Stage II Alive - 0 SKCM
    TCGA-EB-A5VU-01A MALE ASIAN Stage IIIB Alive - 12 SKCM
    TCGA-BF-AAOX-01A MALE WHITE Stage IIC Alive - 11 SKCM
    TCGA-BF-A1Q0-01A MALE WHITE Stage IIC Alive - 17 SKCM
    TCGA-EB-A299-01A MALE WHITE Stage IIA Alive - 0 SKCM
    TCGA-EB-A51B-01A MALE WHITE Stage IIC Alive - -5 SKCM
    TCGA-XV-AAZY-01A FEMALE WHITE Stage IIIC Alive - 13 SKCM
    TCGA-XV-A9W2-01A MALE WHITE Stage I Alive - 12 SKCM
    TCGA-BF-A5ER-01A MALE WHITE Stage IIC Alive - 12 SKCM
    TCGA-GN-A26C-01A MALE WHITE Stage IIIC Dead - [Not Available] SKCM
    TCGA-EB-A85I-01A MALE WHITE Stage IIC Alive - -5 SKCM
    TCGA-FR-A2OS-01A FEMALE WHITE Stage IIC Dead - [Not Available] SKCM
    TCGA-EB-A24C-01A MALE WHITE [Not Available] Alive - 14 SKCM
    TCGA-EB-A6R0-01A FEMALE WHITE Stage IIC Alive - -2 SKCM
    TCGA-BF-A3DJ-01A FEMALE WHITE Stage IIIB Alive - 464 SKCM
    TCGA-GN-A263-01A MALE WHITE Stage IV Dead - [Not Available] SKCM
    TCGA-FR-A3R1-01A MALE WHITE Stage IIC Alive - 307 SKCM
    TCGA-IH-A3EA-01A MALE WHITE Stage IIC Alive - 524 SKCM
    TCGA-ER-A194-01A MALE WHITE [Not Available] Dead - [Not Available] SKCM
    TCGA-EB-A5SE-01A MALE WHITE Stage IIB Alive - 0 SKCM
    TCGA-BF-A5EP-01A FEMALE WHITE Stage IIIC Alive - 11 SKCM
    TCGA-BF-A1PX-01A MALE WHITE Stage IIIB Dead - [Not Available] SKCM
    TCGA-HR-A5NC-01A FEMALE [Not Evaluated] [Not Available] Alive - 0 SKCM
    TCGA-EB-A57M-01A MALE ASIAN Stage IIIB Alive - 8 SKCM
    TCGA-ER-A2NF-01A MALE WHITE Stage IIIB Alive - 498 SKCM
    TCGA-BF-A1PV-01A FEMALE WHITE Stage IIC Alive - 14 SKCM
    TCGA-WE-A8K4-01A MALE WHITE Stage IIB Alive - 306 SKCM
    TCGA-EB-A430-01A MALE WHITE Stage IIC Alive - -2 SKCM
    TCGA-BF-AAP4-01A MALE WHITE Stage IIC Alive - 15 SKCM
    TCGA-EB-A551-01A FEMALE WHITE Stage IIIC Alive - 8 SKCM
    TCGA-BF-A3DL-01A FEMALE WHITE Stage IIIB Alive - 28 SKCM
    TCGA-GF-A2C7-01A MALE WHITE Stage IIC Alive - 1 SKCM
    TCGA-EB-A82B-01A FEMALE ASIAN Stage III Alive - 14 SKCM
    TCGA-EB-A42Y-01A FEMALE ASIAN Stage IIC Alive - 6 SKCM
    TCGA-ER-A42H-01A MALE WHITE [Not Available] Dead - [Not Available] SKCM
    TCGA-EB-A3XE-01A FEMALE WHITE Stage IIA Alive - 0 SKCM
    TCGA-XV-AAZV-01A FEMALE WHITE Stage II Alive - 17 SKCM
    TCGA-D3-A5GT-01A MALE WHITE Stage IIIC Alive - 179 SKCM
    TCGA-EB-A5FP-01A FEMALE WHITE Stage IV Alive - 6 SKCM
    TCGA-EB-A4P0-01A MALE WHITE Stage IIC Alive - -2 SKCM
    TCGA-YG-AA3N-01A MALE [Unknown] Stage IIC Alive - 201 SKCM
    TCGA-BF-AAP8-01A MALE WHITE Stage IIC Alive - 14 SKCM
    TCGA-EB-A3Y7-01A FEMALE WHITE Stage IIIB Alive - 0 SKCM
    TCGA-EB-A44N-01A MALE WHITE Stage IIC Alive - 45 SKCM
    TCGA-XV-AAZW-01A FEMALE WHITE Stage II Alive - 18 SKCM
    TCGA-EB-A3XD-01A FEMALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-EB-A3XF-01A MALE WHITE Stage IIC Alive - 4 SKCM
    TCGA-EB-A4XL-01A FEMALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-D9-A4Z3-01A FEMALE WHITE Stage IIIC Alive - 104 SKCM
    TCGA-BF-A1PU-01A FEMALE WHITE Stage IIC Alive - 387 SKCM
    TCGA-EB-A3XC-01A MALE WHITE Stage IIC Alive - 9 SKCM
    TCGA-EB-A3Y6-01A FEMALE WHITE Stage IIC Alive - 16 SKCM
    TCGA-EB-A4OZ-01A FEMALE WHITE Stage IIIC Alive - -3 SKCM
    TCGA-BF-AAOU-01A FEMALE WHITE Stage IIC Alive - 13 SKCM
    TCGA-BF-A3DN-01A FEMALE WHITE Stage IIIC Alive - 32 SKCM
    TCGA-EB-A41B-01A FEMALE WHITE Stage IIC Alive - 3 SKCM
    TCGA-BF-A3DM-01A MALE WHITE Stage IIA Alive - 14 SKCM
    TCGA-BF-AAP2-01A MALE WHITE Stage IIB Alive - 13 SKCM
    TCGA-EB-A431-01A MALE WHITE Stage IIC Alive - 52 SKCM
    TCGA-EB-A550-01A FEMALE WHITE Stage IIC Alive - 6 SKCM
    TCGA-D9-A4Z2-01A MALE WHITE Stage IIIC Alive - 93 SKCM
    TCGA-FR-A726-01A MALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-FW-A5DX-01A MALE WHITE Stage IIIC Alive - 59 SKCM
    TCGA-GN-A8LN-01A MALE WHITE Stage IIC Alive - 420 SKCM
    TCGA-BF-A9VF-01A MALE WHITE Stage IIC Alive - 12 SKCM
    TCGA-EB-A4OY-01A FEMALE WHITE Stage IIIB Alive - -2 SKCM
    TCGA-BF-A5ES-01A FEMALE WHITE Stage IIC Alive - 19 SKCM
    TCGA-GF-A769-01A MALE WHITE Stage IIC Dead - [Not Available] SKCM
    TCGA-EB-A5UM-01A FEMALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-GN-A4U5-01A FEMALE WHITE Stage IB Alive - 707 SKCM
    TCGA-BF-A5EO-01A MALE WHITE Stage IIC Alive - 338 SKCM
    TCGA-ER-A2NB-01A MALE WHITE Stage IIIB Alive - 486 SKCM
    TCGA-BF-AAP1-01A MALE WHITE Stage IIC Alive - 14 SKCM
    TCGA-EB-A44O-01A MALE WHITE Stage IIB Alive - 5 SKCM
    TCGA-EB-A82C-01A FEMALE ASIAN Stage IIC Alive - 17 SKCM
    TCGA-D9-A3Z4-01A MALE WHITE Stage IIIC Alive - 119 SKCM
    TCGA-ER-A19K-01A FEMALE WHITE Stage IIC Dead - [Not Available] SKCM
    TCGA-EB-A6QZ-01A FEMALE WHITE Stage IIA Alive - -3 SKCM
    TCGA-EB-A42Z-01A MALE ASIAN Stage IIIC Alive - 12 SKCM
    TCGA-EB-A6QY-01A MALE WHITE Stage IIC Alive - -5 SKCM
    TCGA-BF-A5EQ-01A MALE WHITE Stage IIC Alive - 12 SKCM
    TCGA-ER-A196-01A FEMALE WHITE Stage IIC Alive - 477 SKCM
    TCGA-ER-A19T-01A MALE WHITE Stage IV Dead - [Not Available] SKCM
    TCGA-EB-A3HV-01A MALE WHITE Stage IIC Alive - 39 SKCM
    TCGA-EB-A41A-01A MALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-EB-A24D-01A MALE WHITE Stage IIIB Alive - 42 SKCM
    TCGA-EB-A44P-01A FEMALE WHITE Stage IIC Alive - 7 SKCM
    TCGA-FS-A1ZN-01A MALE WHITE Stage IIIA Dead - [Not Available] SKCM
    TCGA-EB-A3XB-01A MALE WHITE Stage II Alive - 36 SKCM
    TCGA-EB-A553-01A MALE WHITE Stage IIC Alive - 13 SKCM
    TCGA-EB-A4IQ-01A FEMALE ASIAN Stage IIIB Alive - 4 SKCM
    TCGA-XV-A9W5-01A MALE WHITE I/II NOS Alive - 15 SKCM
    TCGA-EB-A4IS-01A MALE WHITE Stage IIB Alive - 0 SKCM
    TCGA-EB-A5SF-01A FEMALE WHITE Stage IIC Alive - 0 SKCM
    TCGA-D9-A4Z5-01A MALE WHITE Stage IIB Alive - 29 SKCM
    TCGA-DA-A960-01A MALE WHITE Stage IIB Alive - 435 SKCM
    TCGA-BF-AAP6-01A MALE WHITE Stage III Alive - 15 SKCM
    TCGA-EB-A97M-01A MALE WHITE Stage IIC Alive - 11 SKCM
    TCGA-EB-A85J-01A FEMALE WHITE Stage IIB Alive - -6 SKCM
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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