GRAND

Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

#	Tissue	Tool	netZoo release	Network	PPI	Motif	Expression	Regulator	nReg	Genes	Data	Samples	Precision	Reference
1	Skin Cutaneous Melanoma	PANDA	netZooR 0.9	Adj Code Vis				TF	644	29375	TCGA	103	D

Variable description

This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

Sample	Gender	Race	Stage	Vital status	Age	Days to last follow up	Tumor ID
TCGA-FR-A728-01A	FEMALE	WHITE	Stage IIIB	Alive	-	247	SKCM
TCGA-BF-A1PZ-01A	FEMALE	WHITE	Stage IIB	Alive	-	12	SKCM
TCGA-BF-AAP7-01A	FEMALE	WHITE	Stage IIC	Alive	-	15	SKCM
TCGA-EB-A1NK-01A	MALE	WHITE	Stage IIC	Alive	-	16	SKCM
TCGA-XV-A9VZ-01A	FEMALE	WHITE	Stage II	Alive	-	0	SKCM
TCGA-EB-A5VU-01A	MALE	ASIAN	Stage IIIB	Alive	-	12	SKCM
TCGA-BF-AAOX-01A	MALE	WHITE	Stage IIC	Alive	-	11	SKCM
TCGA-BF-A1Q0-01A	MALE	WHITE	Stage IIC	Alive	-	17	SKCM
TCGA-EB-A299-01A	MALE	WHITE	Stage IIA	Alive	-	0	SKCM
TCGA-EB-A51B-01A	MALE	WHITE	Stage IIC	Alive	-	-5	SKCM
TCGA-XV-AAZY-01A	FEMALE	WHITE	Stage IIIC	Alive	-	13	SKCM
TCGA-XV-A9W2-01A	MALE	WHITE	Stage I	Alive	-	12	SKCM
TCGA-BF-A5ER-01A	MALE	WHITE	Stage IIC	Alive	-	12	SKCM
TCGA-GN-A26C-01A	MALE	WHITE	Stage IIIC	Dead	-	[Not Available]	SKCM
TCGA-EB-A85I-01A	MALE	WHITE	Stage IIC	Alive	-	-5	SKCM
TCGA-FR-A2OS-01A	FEMALE	WHITE	Stage IIC	Dead	-	[Not Available]	SKCM
TCGA-EB-A24C-01A	MALE	WHITE	[Not Available]	Alive	-	14	SKCM
TCGA-EB-A6R0-01A	FEMALE	WHITE	Stage IIC	Alive	-	-2	SKCM
TCGA-BF-A3DJ-01A	FEMALE	WHITE	Stage IIIB	Alive	-	464	SKCM
TCGA-GN-A263-01A	MALE	WHITE	Stage IV	Dead	-	[Not Available]	SKCM
TCGA-FR-A3R1-01A	MALE	WHITE	Stage IIC	Alive	-	307	SKCM
TCGA-IH-A3EA-01A	MALE	WHITE	Stage IIC	Alive	-	524	SKCM
TCGA-ER-A194-01A	MALE	WHITE	[Not Available]	Dead	-	[Not Available]	SKCM
TCGA-EB-A5SE-01A	MALE	WHITE	Stage IIB	Alive	-	0	SKCM
TCGA-BF-A5EP-01A	FEMALE	WHITE	Stage IIIC	Alive	-	11	SKCM
TCGA-BF-A1PX-01A	MALE	WHITE	Stage IIIB	Dead	-	[Not Available]	SKCM
TCGA-HR-A5NC-01A	FEMALE	[Not Evaluated]	[Not Available]	Alive	-	0	SKCM
TCGA-EB-A57M-01A	MALE	ASIAN	Stage IIIB	Alive	-	8	SKCM
TCGA-ER-A2NF-01A	MALE	WHITE	Stage IIIB	Alive	-	498	SKCM
TCGA-BF-A1PV-01A	FEMALE	WHITE	Stage IIC	Alive	-	14	SKCM
TCGA-WE-A8K4-01A	MALE	WHITE	Stage IIB	Alive	-	306	SKCM
TCGA-EB-A430-01A	MALE	WHITE	Stage IIC	Alive	-	-2	SKCM
TCGA-BF-AAP4-01A	MALE	WHITE	Stage IIC	Alive	-	15	SKCM
TCGA-EB-A551-01A	FEMALE	WHITE	Stage IIIC	Alive	-	8	SKCM
TCGA-BF-A3DL-01A	FEMALE	WHITE	Stage IIIB	Alive	-	28	SKCM
TCGA-GF-A2C7-01A	MALE	WHITE	Stage IIC	Alive	-	1	SKCM
TCGA-EB-A82B-01A	FEMALE	ASIAN	Stage III	Alive	-	14	SKCM
TCGA-EB-A42Y-01A	FEMALE	ASIAN	Stage IIC	Alive	-	6	SKCM
TCGA-ER-A42H-01A	MALE	WHITE	[Not Available]	Dead	-	[Not Available]	SKCM
TCGA-EB-A3XE-01A	FEMALE	WHITE	Stage IIA	Alive	-	0	SKCM
TCGA-XV-AAZV-01A	FEMALE	WHITE	Stage II	Alive	-	17	SKCM
TCGA-D3-A5GT-01A	MALE	WHITE	Stage IIIC	Alive	-	179	SKCM
TCGA-EB-A5FP-01A	FEMALE	WHITE	Stage IV	Alive	-	6	SKCM
TCGA-EB-A4P0-01A	MALE	WHITE	Stage IIC	Alive	-	-2	SKCM
TCGA-YG-AA3N-01A	MALE	[Unknown]	Stage IIC	Alive	-	201	SKCM
TCGA-BF-AAP8-01A	MALE	WHITE	Stage IIC	Alive	-	14	SKCM
TCGA-EB-A3Y7-01A	FEMALE	WHITE	Stage IIIB	Alive	-	0	SKCM
TCGA-EB-A44N-01A	MALE	WHITE	Stage IIC	Alive	-	45	SKCM
TCGA-XV-AAZW-01A	FEMALE	WHITE	Stage II	Alive	-	18	SKCM
TCGA-EB-A3XD-01A	FEMALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-EB-A3XF-01A	MALE	WHITE	Stage IIC	Alive	-	4	SKCM
TCGA-EB-A4XL-01A	FEMALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-D9-A4Z3-01A	FEMALE	WHITE	Stage IIIC	Alive	-	104	SKCM
TCGA-BF-A1PU-01A	FEMALE	WHITE	Stage IIC	Alive	-	387	SKCM
TCGA-EB-A3XC-01A	MALE	WHITE	Stage IIC	Alive	-	9	SKCM
TCGA-EB-A3Y6-01A	FEMALE	WHITE	Stage IIC	Alive	-	16	SKCM
TCGA-EB-A4OZ-01A	FEMALE	WHITE	Stage IIIC	Alive	-	-3	SKCM
TCGA-BF-AAOU-01A	FEMALE	WHITE	Stage IIC	Alive	-	13	SKCM
TCGA-BF-A3DN-01A	FEMALE	WHITE	Stage IIIC	Alive	-	32	SKCM
TCGA-EB-A41B-01A	FEMALE	WHITE	Stage IIC	Alive	-	3	SKCM
TCGA-BF-A3DM-01A	MALE	WHITE	Stage IIA	Alive	-	14	SKCM
TCGA-BF-AAP2-01A	MALE	WHITE	Stage IIB	Alive	-	13	SKCM
TCGA-EB-A431-01A	MALE	WHITE	Stage IIC	Alive	-	52	SKCM
TCGA-EB-A550-01A	FEMALE	WHITE	Stage IIC	Alive	-	6	SKCM
TCGA-D9-A4Z2-01A	MALE	WHITE	Stage IIIC	Alive	-	93	SKCM
TCGA-FR-A726-01A	MALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-FW-A5DX-01A	MALE	WHITE	Stage IIIC	Alive	-	59	SKCM
TCGA-GN-A8LN-01A	MALE	WHITE	Stage IIC	Alive	-	420	SKCM
TCGA-BF-A9VF-01A	MALE	WHITE	Stage IIC	Alive	-	12	SKCM
TCGA-EB-A4OY-01A	FEMALE	WHITE	Stage IIIB	Alive	-	-2	SKCM
TCGA-BF-A5ES-01A	FEMALE	WHITE	Stage IIC	Alive	-	19	SKCM
TCGA-GF-A769-01A	MALE	WHITE	Stage IIC	Dead	-	[Not Available]	SKCM
TCGA-EB-A5UM-01A	FEMALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-GN-A4U5-01A	FEMALE	WHITE	Stage IB	Alive	-	707	SKCM
TCGA-BF-A5EO-01A	MALE	WHITE	Stage IIC	Alive	-	338	SKCM
TCGA-ER-A2NB-01A	MALE	WHITE	Stage IIIB	Alive	-	486	SKCM
TCGA-BF-AAP1-01A	MALE	WHITE	Stage IIC	Alive	-	14	SKCM
TCGA-EB-A44O-01A	MALE	WHITE	Stage IIB	Alive	-	5	SKCM
TCGA-EB-A82C-01A	FEMALE	ASIAN	Stage IIC	Alive	-	17	SKCM
TCGA-D9-A3Z4-01A	MALE	WHITE	Stage IIIC	Alive	-	119	SKCM
TCGA-ER-A19K-01A	FEMALE	WHITE	Stage IIC	Dead	-	[Not Available]	SKCM
TCGA-EB-A6QZ-01A	FEMALE	WHITE	Stage IIA	Alive	-	-3	SKCM
TCGA-EB-A42Z-01A	MALE	ASIAN	Stage IIIC	Alive	-	12	SKCM
TCGA-EB-A6QY-01A	MALE	WHITE	Stage IIC	Alive	-	-5	SKCM
TCGA-BF-A5EQ-01A	MALE	WHITE	Stage IIC	Alive	-	12	SKCM
TCGA-ER-A196-01A	FEMALE	WHITE	Stage IIC	Alive	-	477	SKCM
TCGA-ER-A19T-01A	MALE	WHITE	Stage IV	Dead	-	[Not Available]	SKCM
TCGA-EB-A3HV-01A	MALE	WHITE	Stage IIC	Alive	-	39	SKCM
TCGA-EB-A41A-01A	MALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-EB-A24D-01A	MALE	WHITE	Stage IIIB	Alive	-	42	SKCM
TCGA-EB-A44P-01A	FEMALE	WHITE	Stage IIC	Alive	-	7	SKCM
TCGA-FS-A1ZN-01A	MALE	WHITE	Stage IIIA	Dead	-	[Not Available]	SKCM
TCGA-EB-A3XB-01A	MALE	WHITE	Stage II	Alive	-	36	SKCM
TCGA-EB-A553-01A	MALE	WHITE	Stage IIC	Alive	-	13	SKCM
TCGA-EB-A4IQ-01A	FEMALE	ASIAN	Stage IIIB	Alive	-	4	SKCM
TCGA-XV-A9W5-01A	MALE	WHITE	I/II NOS	Alive	-	15	SKCM
TCGA-EB-A4IS-01A	MALE	WHITE	Stage IIB	Alive	-	0	SKCM
TCGA-EB-A5SF-01A	FEMALE	WHITE	Stage IIC	Alive	-	0	SKCM
TCGA-D9-A4Z5-01A	MALE	WHITE	Stage IIB	Alive	-	29	SKCM
TCGA-DA-A960-01A	MALE	WHITE	Stage IIB	Alive	-	435	SKCM
TCGA-BF-AAP6-01A	MALE	WHITE	Stage III	Alive	-	15	SKCM
TCGA-EB-A97M-01A	MALE	WHITE	Stage IIC	Alive	-	11	SKCM
TCGA-EB-A85J-01A	FEMALE	WHITE	Stage IIB	Alive	-	-6	SKCM
Sample	Gender	Race	Stage	Status	Age	Days to follow up	Tumor ID

SKCM cancer networks

Networks

Tool description

Phenotypic information TCGA

Variable description