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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    THYM cancer networks

    Data sets 1 Networks Aggregate 1

    Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression TFs Genes Data Samples Precision
    Reference
    1 Thymoma PANDA netZooR 0.9
    AdjCodeVis
    644 29375 TCGA 119 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample
    Gender Race Stage
    Vital status Age
    Days to last follow up Tumor ID
    TCGA-ZB-A96A-01A MALE WHITE - Alive - 325 THYM
    TCGA-XM-A8RL-01A MALE WHITE - Alive - 2241 THYM
    TCGA-4V-A9QX-01A FEMALE WHITE - Alive - 342 THYM
    TCGA-ZC-AAAH-01A MALE WHITE - Alive - 198 THYM
    TCGA-XM-A8R8-01A FEMALE ASIAN - Alive - 1112 THYM
    TCGA-3S-A8YW-01A MALE WHITE - Alive - 224 THYM
    TCGA-4X-A9F9-01A FEMALE WHITE - Alive - 305 THYM
    TCGA-ZC-AAAF-01A FEMALE WHITE - Alive - 874 THYM
    TCGA-4V-A9QW-01A MALE WHITE - Alive - 428 THYM
    TCGA-XU-AAXZ-01A MALE WHITE - Alive - 1537 THYM
    TCGA-XM-A8RC-01A MALE WHITE - Alive - 2631 THYM
    TCGA-ZB-A96Q-01A MALE WHITE - Alive - 218 THYM
    TCGA-4V-A9QR-01A FEMALE WHITE - Alive - 601 THYM
    TCGA-4V-A9QT-01A FEMALE WHITE - Alive - 660 THYM
    TCGA-5V-A9RR-01A MALE WHITE - Alive - 532 THYM
    TCGA-ZB-A96F-01A MALE WHITE - Alive - 5 THYM
    TCGA-X7-A8M8-01A MALE BLACK OR AFRICAN AMERICAN - Alive - 2533 THYM
    TCGA-X7-A8D8-01A MALE WHITE - Alive - 58 THYM
    TCGA-XU-AAY1-01A FEMALE ASIAN - Alive - 2052 THYM
    TCGA-ZB-A969-01A FEMALE WHITE - Alive - 20 THYM
    TCGA-XM-AAZ1-01A MALE WHITE - Alive - 306 THYM
    TCGA-3Q-A9WF-01A MALE BLACK OR AFRICAN AMERICAN - Alive - 235 THYM
    TCGA-4V-A9QM-01A MALE WHITE - Alive - 1171 THYM
    TCGA-3G-AB0Q-01A MALE WHITE - Alive - 1799 THYM
    TCGA-X7-A8M0-01A FEMALE WHITE - Alive - 441 THYM
    TCGA-ZB-A965-01A FEMALE WHITE - Alive - 504 THYM
    TCGA-XU-A931-01A FEMALE WHITE - Dead - [Not Available] THYM
    TCGA-XM-AAZ2-01A MALE BLACK OR AFRICAN AMERICAN - Alive - 657 THYM
    TCGA-X7-A8M3-01A FEMALE WHITE - Alive - 50 THYM
    TCGA-ZB-A96I-01A FEMALE WHITE - Alive - 158 THYM
    TCGA-ZB-A96H-01A MALE WHITE - Alive - 1140 THYM
    TCGA-XU-A92X-01A MALE ASIAN - Alive - 1065 THYM
    TCGA-4X-A9FA-01A MALE WHITE - Alive - 17 THYM
    TCGA-4V-A9QJ-01A MALE WHITE - Alive - 2702 THYM
    TCGA-4V-A9QL-01A FEMALE WHITE - Alive - 1726 THYM
    TCGA-XM-A8R9-01A FEMALE WHITE - Alive - 1119 THYM
    TCGA-X7-A8DF-01A MALE WHITE - Alive - 605 THYM
    TCGA-XM-A8RG-01A MALE WHITE - Alive - 15 THYM
    TCGA-X7-A8M1-01A MALE ASIAN - Alive - 1282 THYM
    TCGA-XU-A933-01A FEMALE ASIAN - Alive - 1603 THYM
    TCGA-XM-AAZ3-01A MALE WHITE - Alive - 940 THYM
    TCGA-XM-A8RI-01A MALE [Not Evaluated] - Alive - 92 THYM
    TCGA-ZB-A96K-01A MALE WHITE - Alive - 958 THYM
    TCGA-XU-A92Z-01A MALE ASIAN - Alive - 3320 THYM
    TCGA-XM-A8RH-01A FEMALE WHITE - Alive - 41 THYM
    TCGA-5K-AAAP-01A MALE WHITE - Alive - 1054 THYM
    TCGA-ZB-A96B-01A MALE WHITE - Alive - 1835 THYM
    TCGA-3G-AB0T-01A MALE WHITE - Dead - [Not Available] THYM
    TCGA-XU-A92Y-01A FEMALE WHITE - Dead - [Not Available] THYM
    TCGA-ZB-A96R-01A MALE WHITE - Alive - 1075 THYM
    TCGA-XH-A853-01A MALE BLACK OR AFRICAN AMERICAN - Alive - 915 THYM
    TCGA-ZB-A96G-01A MALE WHITE - Alive - 1012 THYM
    TCGA-4V-A9QI-01A MALE WHITE - Alive - 2714 THYM
    TCGA-XU-AAXW-01A FEMALE ASIAN - Alive - 3692 THYM
    TCGA-4X-A9FC-01A FEMALE WHITE - Alive - 1687 THYM
    TCGA-ZB-A96E-01A MALE WHITE - Alive - 7 THYM
    TCGA-ZB-A961-01A MALE WHITE - Alive - 4 THYM
    TCGA-ZB-A96O-01A FEMALE WHITE - Alive - 55 THYM
    TCGA-4X-A9FB-01A MALE WHITE - Alive - 353 THYM
    TCGA-ZC-AAA7-01A MALE WHITE - Dead - [Not Available] THYM
    TCGA-4X-A9FD-01A FEMALE WHITE - Alive - 1200 THYM
    TCGA-XM-A8RE-01A FEMALE WHITE - Alive - 8 THYM
    TCGA-YT-A95H-01A MALE WHITE - Alive - 389 THYM
    TCGA-ZB-A96V-01A MALE WHITE - Alive - 259 THYM
    TCGA-X7-A8D9-01A FEMALE WHITE - Alive - [Completed] THYM
    TCGA-XU-A92V-01A FEMALE ASIAN - Dead - [Not Available] THYM
    TCGA-XU-AAXV-01A FEMALE WHITE - Alive - 3709 THYM
    TCGA-X7-A8DD-01A FEMALE WHITE - Alive - 701 THYM
    TCGA-YT-A95G-01A FEMALE WHITE - Alive - 1184 THYM
    TCGA-YT-A95F-01A FEMALE WHITE - Alive - 586 THYM
    TCGA-4V-A9QU-01A FEMALE WHITE - Alive - 505 THYM
    TCGA-ZL-A9V6-01A MALE WHITE - Alive - 1334 THYM
    TCGA-XU-A92U-01A MALE WHITE - Alive - 4121 THYM
    TCGA-3G-AB0O-01A MALE WHITE - Alive - 1723 THYM
    TCGA-4V-A9QN-01A FEMALE WHITE - Alive - 879 THYM
    TCGA-X7-A8DJ-01A MALE [Unknown] - Alive - 72 THYM
    TCGA-ZB-A96M-01A FEMALE WHITE - Alive - 14 THYM
    TCGA-ZB-A966-01A FEMALE WHITE - Dead - [Not Available] THYM
    TCGA-3G-AB14-01A MALE WHITE - Alive - 540 THYM
    TCGA-XU-A92Q-01A MALE ASIAN - Alive - 1092 THYM
    TCGA-3G-AB19-01A FEMALE WHITE - Alive - 2756 THYM
    TCGA-5U-AB0E-01A MALE WHITE - Alive - 315 THYM
    TCGA-XM-A8RD-01A FEMALE WHITE - Alive - 1231 THYM
    TCGA-X7-A8M5-01A FEMALE WHITE - Alive - 1645 THYM
    TCGA-X7-A8D7-01A FEMALE BLACK OR AFRICAN AMERICAN - Alive - 325 THYM
    TCGA-ZB-A96D-01A FEMALE WHITE - Alive - 1302 THYM
    TCGA-X7-A8DE-01A FEMALE WHITE - Alive - 713 THYM
    TCGA-ZB-A964-01A MALE WHITE - Alive - 565 THYM
    TCGA-XU-A936-01A FEMALE WHITE - Alive - 521 THYM
    TCGA-ZB-A96C-01A FEMALE WHITE - Alive - 1321 THYM
    TCGA-X7-A8DB-01A FEMALE WHITE - Alive - 1537 THYM
    TCGA-YT-A95E-01A MALE WHITE - Alive - 405 THYM
    TCGA-4V-A9QS-01A FEMALE WHITE - Alive - 601 THYM
    TCGA-XU-A930-01A MALE WHITE - Alive - 2440 THYM
    TCGA-X7-A8M6-01A MALE WHITE - Alive - 4213 THYM
    TCGA-XU-A932-01A MALE ASIAN - Alive - 2018 THYM
    TCGA-X7-A8M7-01A MALE WHITE - Alive - 1972 THYM
    TCGA-YT-A95D-01A FEMALE WHITE - Alive - 568 THYM
    TCGA-ZC-AAAA-01A MALE WHITE - Alive - 529 THYM
    TCGA-ZT-A8OM-01A FEMALE WHITE - Alive - 0 THYM
    TCGA-XU-A92W-01A MALE WHITE - Alive - 2600 THYM
    TCGA-5U-AB0D-01A FEMALE WHITE - Alive - 352 THYM
    TCGA-5U-AB0F-01A FEMALE WHITE - Alive - 81 THYM
    TCGA-XU-A92O-01A MALE ASIAN - Alive - 3046 THYM
    TCGA-X7-A8D6-01A FEMALE WHITE - Alive - 4083 THYM
    TCGA-XU-A92T-01A FEMALE WHITE - Alive - 1012 THYM
    TCGA-ZB-A96P-01A MALE WHITE - Alive - 325 THYM
    TCGA-XM-A8RB-01A FEMALE BLACK OR AFRICAN AMERICAN - Alive - 766 THYM
    TCGA-X7-A8M4-01A MALE WHITE - Alive - 3808 THYM
    TCGA-5G-A9ZZ-01A FEMALE WHITE - Alive - 593 THYM
    TCGA-3T-AA9L-01A FEMALE WHITE - Alive - 36 THYM
    TCGA-X7-A8DG-01A MALE WHITE - Alive - 502 THYM
    TCGA-ZB-A963-01A MALE WHITE - Alive - 935 THYM
    TCGA-XU-AAY0-01A FEMALE ASIAN - Alive - 1140 THYM
    TCGA-XU-AAXX-01A FEMALE WHITE - Alive - 2356 THYM
    TCGA-ZB-A96L-01A FEMALE WHITE - Alive - 9 THYM
    TCGA-XM-A8RF-01A FEMALE WHITE - Alive - 797 THYM
    TCGA-3S-AAYX-01A FEMALE WHITE - Alive - 185 THYM
    TCGA-XU-AAXY-01A MALE WHITE - Alive - 1891 THYM
    Sample Gender Race Stage Status Age Days to follow up Tumor ID
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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