GRAND

Hover over the bar plot to get the GO term. Differentially targeted genes and TFs were computed by comparing a cancer network to all other cancers.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif, and gene expression samples. You can check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

#	Tissue	Tool	netZoo release	Network	PPI	Motif	Expression	TFs	Genes	Data	Samples	Precision	Reference
1	Uveal Melanoma	PANDA	netZooR 0.9	Adj Code Vis				644	29375	TCGA	80	D

Variable description

This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

Sample	Gender	Race	Stage	Vital status	Age	Days to last follow up	Tumor ID
TCGA-V4-A9EF-01A	MALE	WHITE	Stage IIIB	Alive	56	719	UVM
TCGA-YZ-A983-01A	FEMALE	WHITE	Stage IIB	Alive	51	154	UVM
TCGA-V4-A9EK-01A	FEMALE	WHITE	Stage IIB	Alive	37	567	UVM
TCGA-VD-AA8N-01A	MALE	[Not Evaluated]	Stage IIB	Alive	86	44	UVM
TCGA-V4-A9EI-01A	MALE	WHITE	Stage IIIB	Dead	78	[Not Available]	UVM
TCGA-VD-A8KL-01A	FEMALE	[Not Evaluated]	Stage IIB	Alive	77	3	UVM
TCGA-VD-A8KM-01A	MALE	[Not Evaluated]	Stage IIB	Alive	65	4	UVM
TCGA-V4-A9EA-01A	MALE	WHITE	Stage IIIA	Alive	66	751	UVM
TCGA-V4-A9E5-01A	FEMALE	WHITE	Stage IIIB	Alive	51	1906	UVM
TCGA-WC-A885-01A	MALE	WHITE	Stage IIA	Alive	60	315	UVM
TCGA-VD-AA8O-01A	MALE	[Not Evaluated]	Stage IIB	Alive	77	228	UVM
TCGA-VD-A8K8-01A	FEMALE	[Not Evaluated]	Stage IIB	Alive	56	20	UVM
TCGA-YZ-A982-01A	FEMALE	WHITE	Stage IIIB	Alive	79	159	UVM
TCGA-VD-A8KK-01A	MALE	[Not Evaluated]	Stage IIIA	Alive	54	3	UVM
TCGA-V4-A9EE-01A	MALE	WHITE	Stage IIB	Dead	86	[Not Available]	UVM
TCGA-V4-A9E7-01A	MALE	WHITE	Stage IIIA	Dead	76	[Not Available]	UVM
TCGA-V4-A9EY-01A	FEMALE	WHITE	Stage IIIA	Alive	66	405	UVM
TCGA-WC-A883-01A	FEMALE	WHITE	Stage IIIA	Dead	76	[Not Available]	UVM
TCGA-V4-A9EQ-01A	MALE	WHITE	Stage IIIA	Dead	64	[Not Available]	UVM
TCGA-V3-A9ZY-01A	MALE	WHITE	Stage IIB	Alive	54	123	UVM
TCGA-VD-A8KA-01B	MALE	[Not Evaluated]	Stage IIB	Alive	22	842	UVM
TCGA-V4-A9EU-01A	FEMALE	WHITE	Stage IIIC	Alive	83	709	UVM
TCGA-V4-A9EM-01A	MALE	WHITE	Stage IIIA	Alive	53	488	UVM
TCGA-VD-A8KI-01A	MALE	[Not Evaluated]	Stage IIB	Alive	68	38	UVM
TCGA-V4-A9EL-01A	MALE	WHITE	Stage IIIA	Alive	60	583	UVM
TCGA-V4-A9F2-01A	FEMALE	WHITE	Stage IIIA	Alive	78	371	UVM
TCGA-V3-A9ZX-01A	MALE	WHITE	Stage IIB	Alive	56	137	UVM
TCGA-V4-A9F8-01A	MALE	WHITE	Stage IIIA	Alive	68	582	UVM
TCGA-V4-A9EH-01A	MALE	WHITE	Stage IIIB	Alive	53	670	UVM
TCGA-V4-A9F0-01A	MALE	WHITE	Stage IIIB	Alive	59	607	UVM
TCGA-V4-A9F3-01A	FEMALE	WHITE	Stage IIIA	Alive	49	525	UVM
TCGA-VD-AA8M-01A	MALE	[Not Evaluated]	Stage IIA	Alive	64	6	UVM
TCGA-WC-A88A-01A	MALE	WHITE	Stage IV	Dead	75	[Not Available]	UVM
TCGA-VD-A8KF-01A	MALE	[Not Evaluated]	Stage IIIB	Dead	68	[Not Available]	UVM
TCGA-VD-AA8S-01B	MALE	[Not Evaluated]	Stage IIA	Alive	40	245	UVM
TCGA-WC-A87W-01A	FEMALE	WHITE	Stage IIA	Alive	57	977	UVM
TCGA-V4-A9E9-01A	MALE	WHITE	Stage IIIA	Alive	50	767	UVM
TCGA-VD-A8KB-01A	FEMALE	[Not Evaluated]	Stage IIB	Alive	66	660	UVM
TCGA-WC-A888-01A	MALE	WHITE	Stage IIB	Alive	76	52	UVM
TCGA-V4-A9F5-01A	FEMALE	WHITE	Stage IV	Alive	85	202	UVM
TCGA-VD-A8K9-01A	FEMALE	[Not Evaluated]	Stage IIA	Alive	71	14	UVM
TCGA-V4-A9ES-01A	FEMALE	WHITE	Stage IIIA	Alive	54	1027	UVM
TCGA-WC-A87Y-01A	MALE	WHITE	[Not Available]	Alive	59	369	UVM
TCGA-VD-AA8P-01A	FEMALE	[Not Evaluated]	Stage IIB	Alive	64	86	UVM
TCGA-V4-A9EV-01A	FEMALE	WHITE	Stage IIIA	Alive	59	836	UVM
TCGA-YZ-A985-01A	FEMALE	WHITE	Stage IIIA	Alive	41	599	UVM
TCGA-V4-A9ET-01A	MALE	WHITE	Stage IIIB	Alive	57	872	UVM
TCGA-VD-A8KD-01A	MALE	[Not Evaluated]	Stage IV	Dead	72	[Not Available]	UVM
TCGA-VD-A8KJ-01A	MALE	[Not Evaluated]	Stage IIB	Alive	53	961	UVM
TCGA-V4-A9EO-01A	MALE	WHITE	Stage IIIA	Alive	74	407	UVM
TCGA-V4-A9F4-01A	MALE	WHITE	Stage IIIA	Alive	41	256	UVM
TCGA-VD-AA8R-01A	FEMALE	[Not Evaluated]	Stage IIB	Alive	78	2	UVM
TCGA-V4-A9F7-01A	FEMALE	WHITE	Stage IIB	Alive	78	927	UVM
TCGA-WC-A881-01A	MALE	WHITE	Stage IIB	Alive	75	694	UVM
TCGA-WC-A882-01A	FEMALE	WHITE	Stage IIB	Alive	50	344	UVM
TCGA-WC-A880-01A	MALE	WHITE	Stage IIIA	Alive	63	842	UVM
TCGA-WC-A87T-01A	MALE	WHITE	Stage IIB	Alive	64	2149	UVM
TCGA-WC-AA9E-01A	MALE	WHITE	Stage IIA	Alive	60	315	UVM
TCGA-VD-A8KG-01A	FEMALE	[Not Evaluated]	Stage IIA	Alive	47	19	UVM
TCGA-WC-AA9A-01A	FEMALE	WHITE	Stage IIA	Dead	70	[Not Available]	UVM
TCGA-YZ-A980-01A	MALE	WHITE	Stage IIIA	Alive	75	1283	UVM
TCGA-VD-A8KN-01A	FEMALE	[Not Evaluated]	Stage IIA	Alive	60	7	UVM
TCGA-VD-A8KO-01A	MALE	[Not Evaluated]	Stage IIA	Alive	51	26	UVM
TCGA-VD-A8KH-01A	MALE	[Not Evaluated]	Stage IIIB	Alive	69	10	UVM
TCGA-V4-A9EW-01A	FEMALE	WHITE	Stage IIIA	Alive	44	774	UVM
TCGA-RZ-AB0B-01A	FEMALE	WHITE	Stage IV	Dead	47	[Not Available]	UVM
TCGA-VD-A8KE-01A	FEMALE	[Not Evaluated]	Stage IIA	Alive	74	6	UVM
TCGA-V4-A9F1-01A	FEMALE	WHITE	Stage IIB	Alive	46	556	UVM
TCGA-V4-A9EX-01A	FEMALE	WHITE	Stage IIIA	Dead	55	[Not Available]	UVM
TCGA-YZ-A984-01A	FEMALE	WHITE	Stage IIB	Alive	50	946	UVM
TCGA-VD-AA8T-01A	FEMALE	[Not Evaluated]	Stage IIA	Alive	83	49	UVM
TCGA-V4-A9EJ-01A	MALE	WHITE	Stage IIB	Alive	38	382	UVM
TCGA-VD-AA8Q-01A	MALE	[Not Evaluated]	Stage IIB	Alive	71	2	UVM
TCGA-V4-A9EC-01A	FEMALE	WHITE	Stage IIB	Alive	75	743	UVM
TCGA-VD-A8K7-01B	MALE	[Not Evaluated]	Stage IIIA	Alive	39	3	UVM
TCGA-V4-A9EZ-01A	FEMALE	WHITE	Stage IIB	Alive	78	599	UVM
TCGA-V4-A9E8-01A	MALE	WHITE	Stage IIIA	Dead	49	[Not Available]	UVM
TCGA-V4-A9ED-01A	MALE	WHITE	Stage IIIA	Alive	45	654	UVM
TCGA-WC-A87U-01A	MALE	WHITE	Stage IIIA	Dead	73	[Not Available]	UVM
TCGA-WC-A884-01A	FEMALE	WHITE	Stage IIIB	Alive	35	12	UVM
Sample	Gender	Race	Stage	Status	Age	Days to follow up	Tumor ID

UVM cancer networks

Networks

Tool description

Phenotypic information TCGA

Variable description