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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Bile Duct cancer networks

    Data sets 1 Networks Single-sample 35

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (2023) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Bile Duct Cancer LIONESS netZooM 0.5.3
    AdjCodeVis
    TF 1132 18560 CCLE 35 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000182 SNU869 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-000209 SNU1079 - Male - - biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-000268 SNU245 - Unknown - - biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-000377 SNU478 - Unknown - - biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-000461 SNU1196 - Unknown - - biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-000808 HUH28 - Female asian - biliary_tract Primary Bile Duct Cancer -
    Adj359 MBVis
    ACH-000976 HUCCT1 907069.0 Male asian - ascites Metastasis Bile Duct Cancer -
    Adj359 MBVis
    ACH-001494 EGI1 906853.0 Male - Adherent biliary_tract Primary Bile Duct Cancer -
    Adj359 MBVis
    ACH-001536 KKU100 - Female - Adherent liver Primary Bile Duct Cancer -
    Adj359 MBVis
    ACH-001538 KKU213 - Male - Adherent biliary_tract Primary Bile Duct Cancer -
    Adj359 MBVis
    ACH-001673 TFK1 - Male - Adherent biliary_tract Primary Bile Duct Cancer -
    Adj359 MBVis
    ACH-001834 ICC10 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001835 ICC106 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001836 ICC108 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001838 ICC12 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001839 ICC137 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001841 ICC15 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001842 ICC2 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001843 ICC3 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001844 ICC4 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001845 ICC5 - Unknown - - biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001846 ICC6 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001848 ICC8 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001849 ICC9 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001852 HKGZCC - Male - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001853 KMCH1 - Male - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001856 RBE - Female - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001857 SG231 - Male - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001858 SSP25 - Female - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001862 TGBC52TKB - Male - Adherent lymph_node - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001863 TKKK - Male - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001864 YSCCC - Female - Adherent ascites - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001959 CCLP1 - Female - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001960 CCSW1 - Female - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    ACH-001997 ECC2 - Unknown - Adherent biliary_tract - Bile Duct Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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