To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Bile Duct Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 36 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000182 | SNU869 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-000209 | SNU1079 | - | Male | - | - | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-000268 | SNU245 | - | Unknown | - | - | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-000377 | SNU478 | - | Unknown | - | - | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-000461 | SNU1196 | - | Unknown | - | - | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-000808 | HUH28 | - | Female | asian | - | biliary_tract | Primary | Bile Duct Cancer | - | |
| ACH-000976 | HUCCT1 | 907069.0 | Male | asian | - | ascites | Metastasis | Bile Duct Cancer | - | |
| ACH-001494 | EGI1 | 906853.0 | Male | - | Adherent | biliary_tract | Primary | Bile Duct Cancer | - | |
| ACH-001536 | KKU100 | - | Female | - | Adherent | liver | Primary | Bile Duct Cancer | - | |
| ACH-001538 | KKU213 | - | Male | - | Adherent | biliary_tract | Primary | Bile Duct Cancer | - | |
| ACH-001673 | TFK1 | - | Male | - | Adherent | biliary_tract | Primary | Bile Duct Cancer | - | |
| ACH-001834 | ICC10 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001835 | ICC106 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001836 | ICC108 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001838 | ICC12 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001839 | ICC137 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001841 | ICC15 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001842 | ICC2 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001843 | ICC3 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001844 | ICC4 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001845 | ICC5 | - | Unknown | - | - | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001846 | ICC6 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001848 | ICC8 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001849 | ICC9 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001852 | HKGZCC | - | Male | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001853 | KMCH1 | - | Male | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001856 | RBE | - | Female | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001857 | SG231 | - | Male | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001858 | SSP25 | - | Female | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001862 | TGBC52TKB | - | Male | - | Adherent | lymph_node | - | Bile Duct Cancer | - | |
| ACH-001863 | TKKK | - | Male | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001864 | YSCCC | - | Female | - | Adherent | ascites | - | Bile Duct Cancer | - | |
| ACH-001959 | CCLP1 | - | Female | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001960 | CCSW1 | - | Female | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| ACH-001997 | ECC2 | - | Unknown | - | Adherent | biliary_tract | - | Bile Duct Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |