To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID | Cell name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000011 | 253J | - | Male | - | - | lymph_node | Metastasis | Bladder Cancer | BLCA | |
| ACH-000018 | T24 | 724812.0 | Female | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000026 | 253JBV | - | Male | - | Adherent | lymph_node | Metastasis | Bladder Cancer | BLCA | |
| ACH-000142 | CAL29 | 1290730.0 | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000242 | RT4 | 687455.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000384 | SW780 | 687457.0 | Female | caucasian | - | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000396 | J82 | 753566.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000473 | RT112 | 909704.0 | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000486 | KU1919 | 907312.0 | Male | - | Adherent | urinary_tract | - | Bladder Cancer | BLCA | |
| ACH-000522 | UMUC3 | 724838.0 | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA |