To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Bladder Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 36 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000011 | 253J | - | Male | - | - | lymph_node | Metastasis | Bladder Cancer | BLCA | |
| ACH-000018 | T24 | 724812.0 | Female | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000026 | 253JBV | - | Male | - | Adherent | lymph_node | Metastasis | Bladder Cancer | BLCA | |
| ACH-000142 | CAL29 | 1290730.0 | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000242 | RT4 | 687455.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000384 | SW780 | 687457.0 | Female | caucasian | - | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000396 | J82 | 753566.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000473 | RT112 | 909704.0 | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000486 | KU1919 | 907312.0 | Male | - | Adherent | urinary_tract | - | Bladder Cancer | BLCA | |
| ACH-000522 | UMUC3 | 724838.0 | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000545 | VMCUB1 | 909780.0 | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000547 | HT1197 | 907065.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000566 | SW1710 | 909749.0 | Female | caucasian | - | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000593 | BC3C | - | Female | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000720 | TCCSUP | 687459.0 | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000724 | HT1376 | 907066.0 | Female | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000741 | UBLC1 | - | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000753 | JMSU1 | - | Male | - | Adherent | ascites | Metastasis | Bladder Cancer | BLCA | |
| ACH-000802 | BFTC905 | 910926.0 | Female | asian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000834 | UMUC1 | - | Male | african_american | Adherent | lymph_node | Metastasis | Bladder Cancer | BLCA | |
| ACH-000839 | SCABER | - | Male | african_american | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000862 | KMBC2 | - | Unknown | - | - | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000896 | 647V | 906797.0 | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-000905 | 5637 | 687452.0 | Male | caucasian | Adherent | urinary_tract | - | Bladder Cancer | BLCA | |
| ACH-000973 | 639V | 906798.0 | Male | caucasian | Adherent | urinary_tract | Primary | Bladder Cancer | BLCA | |
| ACH-001183 | RT11284 | - | Female | - | not found | urinary_tract | - | Bladder Cancer | BLCA | |
| ACH-001407 | UMUC13 | - | Male | - | Adherent | lymph_node | Metastasis | Bladder Cancer | - | |
| ACH-001408 | UMUC14 | - | Male | - | Adherent | urinary_tract | Metastasis | Bladder Cancer | - | |
| ACH-001409 | UMUC16 | - | Unknown | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001410 | UMUC4 | - | Female | - | - | lymph_node | Metastasis | Bladder Cancer | - | |
| ACH-001411 | UMUC5 | - | Female | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001412 | UMUC10 | - | Unknown | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001413 | UMUC11 | - | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001414 | UMUC6 | - | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001415 | UMUC7 | - | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| ACH-001416 | UMUC9 | - | Male | - | Adherent | urinary_tract | Primary | Bladder Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |