To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Bone Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 75 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000039 | SKNMC | - | Female | caucasian | Adherent | bone | Metastasis | Bone Cancer | SARC | |
| ACH-000041 | RDES | - | Male | caucasian | Adherent | bone | Primary | Bone Cancer | SARC | |
| ACH-000052 | A673 | 684052.0 | Female | - | Adherent | soft_tissue | Primary | Bone Cancer | SARC | |
| ACH-000082 | G292CLONEA141B1 | 1290807.0 | Female | caucasian | Adherent | bone | Primary | Bone Cancer | SARC | |
| ACH-000087 | SKES1 | 684072.0 | Male | caucasian | - | bone | Primary | Bone Cancer | SARC | |
| ACH-000210 | CADOES1 | 753539.0 | Female | asian | Mixed adherent and suspension | pleural_effusion | Metastasis | Bone Cancer | SARC | |
| ACH-000279 | EWS502 | - | Unknown | - | not found | bone | - | Bone Cancer | - | |
| ACH-000359 | MG63 | 908131.0 | Male | caucasian | - | bone | Primary | Bone Cancer | SARC | |
| ACH-000364 | U2OS | 909776.0 | Female | caucasian | Adherent | bone | Primary | Bone Cancer | SARC | |
| ACH-000391 | MHHES1 | 908134.0 | Male | turkish | Adherent | ascites | Metastasis | Bone Cancer | SARC | |
| ACH-000410 | SAOS2 | 909707.0 | Female | caucasian | Adherent | bone | Primary | Bone Cancer | SARC | |
| ACH-000418 | SW1353 | - | Female | caucasian | - | bone | Primary | Bone Cancer | SARC | |
| ACH-000424 | TC71 | 1240221.0 | Male | - | - | bone | Primary | Bone Cancer | SARC | |
| ACH-000499 | EW8 | - | Male | - | not found | bone | - | Bone Cancer | - | |
| ACH-000516 | CAL78 | 1290765.0 | Male | - | Adherent | soft_tissue | - | Bone Cancer | SARC | |
| ACH-000613 | HOS | 907060.0 | Female | caucasian | - | bone | Primary | Bone Cancer | SARC | |
| ACH-000748 | SJSA1 | 909717.0 | Male | african_american | Adherent | bone | Primary | Bone Cancer | SARC | |
| ACH-001001 | 143B | - | Female | caucasian | not found | bone | Primary | Bone Cancer | - | |
| ACH-001022 | CBAGPN | - | Unknown | - | - | bone | - | Bone Cancer | - | |
| ACH-001029 | CHLA10 | - | Female | - | not found | lymph_node | - | Bone Cancer | - | |
| ACH-001030 | CHLA218 | - | Female | - | - | bone | - | Bone Cancer | - | |
| ACH-001032 | CHLA32 | - | Female | - | - | bone | - | Bone Cancer | - | |
| ACH-001033 | CHLA57 | - | Unknown | - | not found | bone | - | Bone Cancer | - | |
| ACH-001034 | CHLA9 | - | Female | - | - | bone | - | Bone Cancer | - | |
| ACH-001035 | CHLA99 | - | Male | - | - | bone | - | Bone Cancer | - | |
| ACH-001038 | COGE352 | - | Male | - | not found | haematopoietic_and_lymphoid_tissue | - | Bone Cancer | - | |
| ACH-001192 | SKNEP1 | - | Female | - | not found | pleural_effusion | Metastasis | Bone Cancer | KIRC | |
| ACH-001193 | SKPNDW | 909731.0 | Male | - | not found | Embryonal | - | Bone Cancer | - | |
| ACH-001283 | TC106 | - | Male | - | not found | skin | Metastasis | Bone Cancer | - | |
| ACH-001430 | TC138 | - | Male | - | not found | bone | - | Bone Cancer | - | |
| ACH-001431 | TC205 | - | Unknown | - | not found | bone | - | Bone Cancer | - | |
| ACH-001519 | HEMCSS | 907290.0 | Female | - | - | soft_tissue | Primary | Bone Cancer | - | |
| ACH-001526 | HUO9 | 907072.0 | Female | - | Adherent | bone | Primary | Bone Cancer | - | |
| ACH-001712 | HS860T | - | Male | - | - | bone | - | Bone Cancer | - | |
| ACH-001715 | CAL72 | 906827.0 | Male | - | Adherent | bone | - | Bone Cancer | - | |
| ACH-001814 | OS252 | - | Unknown | - | Adherent | bone | Primary | Bone Cancer | - | |
| ACH-001818 | C396 | - | Unknown | - | - | bone | Metastasis | Bone Cancer | - | |
| ACH-002067 | NOS1 | - | Male | - | Adherent | bone | Primary | Bone Cancer | - | |
| ACH-002069 | HSOS1 | - | Female | - | Adherent | bone | Primary | Bone Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |