To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Brain Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 84 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000025 | CH157MN | - | Female | - | Semi-adherent | central_nervous_system | - | Brain Cancer | - | |
| ACH-000027 | GOS3 | - | Male | - | - | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-000036 | U343 | - | Unknown | - | Adherent | central_nervous_system | - | Brain Cancer | - | |
| ACH-000040 | U118MG | 687588.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000055 | D283MED | 906834.0 | Male | caucasian | Adherent | abdomen | Metastasis | Brain Cancer | MB | |
| ACH-000067 | HS683 | 1240150.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000075 | U87MG | 687590.0 | Unknown | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000095 | D341 | - | Male | - | - | central_nervous_system | - | Brain Cancer | MB | |
| ACH-000098 | GAMG | 906868.0 | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000102 | GMS10 | 906873.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000126 | KG1C | - | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000128 | LN319 | - | Male | - | Adherent | central_nervous_system | - | Brain Cancer | - | |
| ACH-000137 | 8MGBA | 687562.0 | Female | african_american | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000152 | M059K | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000200 | NMCG1 | 908449.0 | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000208 | U178 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000211 | DAOY | 906833.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | MB | |
| ACH-000215 | LN382 | - | Male | - | Adherent | central_nervous_system | - | Brain Cancer | - | |
| ACH-000231 | KALS1 | 907271.0 | Female | - | - | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000232 | U251MG | 905983.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000244 | DKMG | 906839.0 | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000269 | AM38 | 910933.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000273 | SF539 | 905984.0 | Female | - | Mixed adherent and suspension | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000283 | A1207 | - | Female | - | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-000289 | SNU466 | - | Male | asian | - | central_nervous_system | - | Brain Cancer | GBM | |
| ACH-000323 | 42MGBA | 687561.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000328 | LN215 | - | Female | - | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-000329 | CCFSTTG1 | 906823.0 | Female | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000368 | SNU1105 | - | Male | asian | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000370 | SNU626 | - | Male | asian | - | central_nervous_system | - | Brain Cancer | GBM | |
| ACH-000376 | SF295 | 905985.0 | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000389 | H4 | 907042.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000437 | SW1088 | 909745.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000445 | KNS60 | - | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000455 | LN428 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000464 | CAS1 | 910943.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000469 | YH13 | 909905.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000479 | KNS81 | - | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000490 | SF767 | - | Female | - | not found | stomach | Metastasis | Brain Cancer | CESC | |
| ACH-000504 | SNB75 | 905982.0 | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000543 | SNU489 | - | Male | asian | - | central_nervous_system | - | Brain Cancer | GBM | |
| ACH-000558 | A172 | 687563.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000570 | YKG1 | 687592.0 | Female | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000571 | T98G | 687586.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000591 | LN235 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000592 | TM31 | - | Female | - | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-000595 | LN229 | 1240169.0 | Female | caucasian | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000609 | SF126 | 909712.0 | Female | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000622 | KNS42 | 907282.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000623 | SNU201 | - | Male | asian | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000629 | IOMMLEE | - | Male | - | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-000631 | KS1 | 907313.0 | Female | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000634 | LN340 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000655 | SF268 | 905986.0 | Female | - | Mixed adherent and suspension | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000673 | LN443 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000676 | LN464 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-000738 | GB1 | 687568.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000756 | GI1 | 906871.0 | Male | asian | Adherent | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000760 | LNZ308 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | LGG | |
| ACH-000776 | ONS76 | 909248.0 | Female | - | - | central_nervous_system | Primary | Brain Cancer | MB | |
| ACH-000807 | SNU738 | - | Male | asian | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-000819 | LN18 | 1240168.0 | Male | caucasian | Adherent | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000863 | DBTRG05MG | 906835.0 | Female | caucasian | - | central_nervous_system | Primary | Brain Cancer | GBM | |
| ACH-000883 | SW1783 | 909750.0 | Male | caucasian | - | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-000887 | SF172 | - | Female | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001016 | BECKER | 906746.0 | Male | - | - | central_nervous_system | - | Brain Cancer | GBM | |
| ACH-001053 | D425 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001054 | D458 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001067 | F5 | - | Male | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001172 | R256 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001173 | R262 | - | Unknown | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001201 | SUMB002 | - | Unknown | - | - | central_nervous_system | - | Brain Cancer | - | |
| ACH-001232 | UW228 | - | Female | - | not found | central_nervous_system | - | Brain Cancer | - | |
| ACH-001329 | ANGMCSS | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001605 | NO10 | 908452.0 | Male | - | - | central_nervous_system | Primary | Brain Cancer | LGG | |
| ACH-001608 | NP2 | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001609 | NP3 | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001610 | NP5 | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001611 | NP8 | - | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001622 | ONDA7 | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001623 | ONDA8 | - | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001624 | ONDA9 | - | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001670 | TASK1 | - | Female | - | Adherent | central_nervous_system | Primary | Brain Cancer | - | |
| ACH-001711 | PFSK1 | 683667.0 | Male | - | Adherent | central_nervous_system | Primary | Brain Cancer | MB | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |