To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Breast Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 61 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000017 | SKBR3 | - | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000019 | MCF7 | 905946.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000028 | KPL1 | - | Female | asian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000044 | MDAMB134VI | - | Female | caucasian | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000097 | ZR751 | - | Female | caucasian | Adherent | ascites | Metastasis | Breast Cancer | BRCA | |
| ACH-000111 | HCC1187 | 749711.0 | Female | caucasian | Mixed adherent and suspension | breast | Primary | Breast Cancer | BRCA | |
| ACH-000117 | EFM192A | 1290798.0 | Female | caucasian | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000147 | T47D | 905945.0 | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000148 | HS578T | 905957.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000196 | HCC1599 | 749713.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000212 | CAL120 | 906826.0 | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000223 | HCC1937 | 749714.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000248 | AU565 | 910704.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000258 | DU4475 | 906844.0 | Female | caucasian | Suspension | skin | Metastasis | Breast Cancer | BRCA | |
| ACH-000276 | HCC38 | 749717.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000277 | HCC1419 | 907045.0 | Female | - | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000288 | BT549 | 905951.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000330 | EFM19 | 906851.0 | Female | caucasian | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000349 | HCC1500 | 1303900.0 | Female | african_american | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000352 | HCC1428 | 1290905.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000374 | HCC1143 | 749710.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000536 | BT20 | 906801.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000554 | UACC893 | 909778.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000568 | UACC812 | 910910.0 | Female | - | Suspension | breast | Primary | Breast Cancer | BRCA | |
| ACH-000573 | MDAMB436 | 1240172.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000621 | MDAMB157 | 925338.0 | Female | african_american | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000624 | HCC1806 | 907047.0 | Female | african_american | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000643 | HDQP1 | 1290922.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000668 | HCC70 | 907048.0 | Female | african_american | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000691 | HCC2157 | 749715.0 | Female | african_american | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000699 | HCC1395 | 749712.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000711 | JIMT1 | 1298157.0 | Female | - | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000721 | HMC18 | - | Female | asian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000725 | HCC202 | 1290906.0 | Female | caucasian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000755 | HCC2218 | 749716.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000759 | MDAMB175VII | 908120.0 | Female | african_american | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000768 | MDAMB231 | 905960.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000783 | CAMA1 | 946382.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000818 | BT483 | 949093.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000828 | ZR7530 | 909907.0 | Female | african_american | - | ascites | Metastasis | Breast Cancer | BRCA | |
| ACH-000849 | MDAMB468 | 908123.0 | Female | african_american | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000856 | CAL51 | 910927.0 | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000857 | CAL851 | 910852.0 | Female | - | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000859 | HCC1954 | 749709.0 | Female | east_indian | Adherent | breast | Primary | Breast Cancer | BRCA | |
| ACH-000876 | MDAMB415 | 924240.0 | Female | caucasian | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000902 | CAL148 | 924106.0 | Female | - | - | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000910 | MDAMB453 | 908122.0 | Female | caucasian | Adherent | pericardial_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-000927 | BT474 | 946359.0 | Female | caucasian | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000930 | HCC1569 | 907046.0 | Female | african_american | - | breast | Primary | Breast Cancer | BRCA | |
| ACH-000934 | MDAMB361 | 908121.0 | Female | caucasian | - | central_nervous_system | Metastasis | Breast Cancer | BRCA | |
| ACH-001388 | SUM102PT | - | Female | - | - | breast | Primary | Breast Cancer | - | |
| ACH-001389 | SUM1315MO2 | - | Female | - | Adherent | skin | Metastasis | Breast Cancer | - | |
| ACH-001390 | SUM149PT | - | Female | - | Adherent | breast | Primary | Breast Cancer | - | |
| ACH-001391 | SUM159PT | - | Female | - | Adherent | breast | Primary | Breast Cancer | - | |
| ACH-001392 | SUM185PE | - | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | - | |
| ACH-001394 | SUM229PE | - | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | - | |
| ACH-001395 | SUM44PE | - | Female | - | - | pleural_effusion | Metastasis | Breast Cancer | - | |
| ACH-001396 | SUM52PE | - | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | - | |
| ACH-001419 | VP229 | - | Female | - | Adherent | breast | Primary | Breast Cancer | - | |
| ACH-001819 | MFM223 | - | Female | - | Adherent | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| ACH-001820 | COLO824 | - | Female | - | Mix (loosely adherent with floating clumps) | pleural_effusion | Metastasis | Breast Cancer | BRCA | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |