To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Cervical Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 17 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000556 | SIHA | 930297.0 | Female | - | Adherent | cervix | - | Cervical Cancer | CESC | |
| ACH-001086 | HELA | 1298134.0 | Female | - | - | cervix | - | Cervical Cancer | CESC | |
| ACH-001333 | C33A | 687505.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | CESC | |
| ACH-001334 | C4I | 687506.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | CESC | |
| ACH-001335 | C4II | - | Female | - | Adherent | cervix | Primary | Cervical Cancer | - | |
| ACH-001336 | CASKI | 906824.0 | Female | - | Adherent | small_intestine | Metastasis | Cervical Cancer | CESC | |
| ACH-001341 | DOTC24510 | 906843.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | CESC | |
| ACH-001360 | MS751 | 1240179.0 | Female | - | Adherent | lymph_node | Metastasis | Cervical Cancer | CESC | |
| ACH-001400 | SW954 | 924247.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | - | |
| ACH-001402 | SW756 | 724839.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | CESC | |
| ACH-001451 | BOKU | - | Female | - | Adherent | cervix | Primary | Cervical Cancer | - | |
| ACH-001513 | HCA1 | - | Female | - | Adherent | cervix | Metastasis | Cervical Cancer | - | |
| ACH-001515 | HCS2 | - | Female | - | Adherent | cervix | Metastasis | Cervical Cancer | - | |
| ACH-001516 | HCSC1 | - | Female | - | - | ascites | Primary | Cervical Cancer | - | |
| ACH-001525 | HT3 | 907068.0 | Female | - | Adherent | lymph_node | Metastasis | Cervical Cancer | CESC | |
| ACH-001650 | SISO | 1240212.0 | Female | - | Adherent | cervix | Primary | Cervical Cancer | CESC | |
| ACH-002019 | HOKUG | - | Female | - | Adherent | cervix | Primary | Cervical Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |