To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Colon/Colorectal Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 71 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000003 | CACO2 | - | Male | - | - | Colon | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000007 | LS513 | 907795.0 | Male | caucasian | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000009 | C2BBE1 | 910700.0 | Male | caucasian | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000089 | NCIH684 | - | Male | - | - | liver | Metastasis | Colon/Colorectal Cancer | LIHC | |
| ACH-000202 | COLO320 | - | Female | caucasian | Suspension | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000236 | SW1417 | 909747.0 | Female | caucasian | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000249 | CL11 | 1290769.0 | Male | - | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000252 | LS1034 | 917486.0 | Male | caucasian | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000253 | COLO201 | - | Male | caucasian | Suspension | ascites | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000286 | SNU1033 | - | Female | asian | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000296 | OUMS23 | - | Male | - | - | pericardial_effusion | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000342 | CL14 | - | Male | - | - | large_intestine | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000350 | COLO678 | 910689.0 | Male | - | Adherent | lymph_node | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000360 | NCIH508 | 908442.0 | Male | caucasian | - | abdomen | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000381 | T84 | 909761.0 | Male | - | Adherent | lung | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000400 | SKCO1 | 909718.0 | Male | caucasian | - | ascites | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000403 | NCIH747 | 908457.0 | Male | caucasian | Adherent | large_intestine | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000412 | SNU1197 | - | Male | asian | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000421 | SW837 | 909755.0 | Male | caucasian | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000467 | HCC56 | 1290907.0 | Unknown | - | - | large_intestine | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000470 | SW1463 | 909748.0 | Female | caucasian | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000489 | SW1116 | 909746.0 | Male | caucasian | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000491 | NCIH716 | 908458.0 | Male | caucasian | Adherent | ascites | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000501 | LS123 | 907792.0 | Female | caucasian | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000532 | SNU61 | 1660035.0 | Male | asian | - | liver | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000552 | HT29 | 905939.0 | Female | caucasian | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000565 | RCM1 | 909263.0 | Female | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000651 | SW620 | 905962.0 | Male | caucasian | - | lymph_node | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000680 | SW948 | 909757.0 | Female | caucasian | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000683 | SNU503 | - | Male | asian | - | abdomen | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000708 | SNU283 | 1659929.0 | Female | asian | - | abdomen | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000722 | SNUC1 | 910905.0 | Male | asian | - | abdomen | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000798 | CL40 | 1240124.0 | Female | - | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000820 | SW403 | - | Female | caucasian | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000842 | SW480 | - | Male | caucasian | - | lymph_node | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000895 | CL34 | 1290771.0 | Female | - | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000926 | HT55 | 907287.0 | Unknown | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000935 | MDST8 | 1240173.0 | Unknown | - | Adherent | large_intestine | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000943 | RKO | 909698.0 | Unknown | - | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000950 | LOVO | 907790.0 | Male | caucasian | Adherent | lymph_node | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000955 | SNU407 | 1660034.0 | Male | asian | - | soft_tissue | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000957 | LS180 | 998189.0 | Female | caucasian | not found | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000958 | SW48 | 909751.0 | Female | caucasian | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000959 | SNUC4 | - | Male | asian | - | large_intestine | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000963 | CCK81 | 1240123.0 | Female | - | - | large_intestine | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000967 | SNUC2A | - | Female | asian | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000969 | KM12 | 905989.0 | Unknown | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000970 | SNUC5 | 1674021.0 | Female | asian | - | Colon | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000971 | HCT116 | 905936.0 | Male | - | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000982 | GP2D | - | Female | - | - | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000985 | LS411N | 907794.0 | Male | caucasian | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000986 | HT115 | 907289.0 | Unknown | - | Adherent | Colon | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000989 | SNU175 | 1659928.0 | Female | asian | - | abdomen | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000991 | SNU81 | 1660036.0 | Male | asian | - | Colon | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000997 | HCT15 | 905937.0 | Male | - | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000998 | CW2 | 910554.0 | Female | - | - | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-000999 | SNU1040 | 1659823.0 | Male | asian | - | Colon | - | Colon/Colorectal Cancer | COAD/READ | |
| ACH-001061 | DLD1 | - | Male | - | not found | large_intestine | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-001345 | GP5D | 907291.0 | Female | - | Adherent | Colon | Primary | Colon/Colorectal Cancer | COAD/READ | |
| ACH-001399 | SW626 | 909753.0 | Female | - | - | ovary | Metastasis | Colon/Colorectal Cancer | COAD/READ | |
| ACH-001454 | C10 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001456 | C125PM | - | Unknown | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001458 | C75 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001459 | C80 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001460 | C84 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001461 | C99 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-001786 | SNU1544 | - | Female | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-002022 | PMFKO14 | - | Female | - | - | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-002023 | TGBC18TKB | - | Female | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-002024 | ECC4 | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| ACH-002025 | TT1TKB | - | Male | - | Adherent | large_intestine | Primary | Colon/Colorectal Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |