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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Colon Colorectal cancer networks

    Data sets 1 Networks Single-sample 71

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Colon/Colorectal Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 71 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000003 CACO2 - Male - - Colon - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000007 LS513 907795.0 Male caucasian Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000009 C2BBE1 910700.0 Male caucasian Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000089 NCIH684 - Male - - liver Metastasis Colon/Colorectal Cancer LIHC
    Adj359 MBVis
    ACH-000202 COLO320 - Female caucasian Suspension large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000236 SW1417 909747.0 Female caucasian - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000249 CL11 1290769.0 Male - Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000252 LS1034 917486.0 Male caucasian Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000253 COLO201 - Male caucasian Suspension ascites Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000286 SNU1033 - Female asian - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000296 OUMS23 - Male - - pericardial_effusion Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000342 CL14 - Male - - large_intestine - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000350 COLO678 910689.0 Male - Adherent lymph_node Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000360 NCIH508 908442.0 Male caucasian - abdomen Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000381 T84 909761.0 Male - Adherent lung Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000400 SKCO1 909718.0 Male caucasian - ascites Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000403 NCIH747 908457.0 Male caucasian Adherent large_intestine Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000412 SNU1197 - Male asian - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000421 SW837 909755.0 Male caucasian Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000467 HCC56 1290907.0 Unknown - - large_intestine - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000470 SW1463 909748.0 Female caucasian Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000489 SW1116 909746.0 Male caucasian - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000491 NCIH716 908458.0 Male caucasian Adherent ascites Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000501 LS123 907792.0 Female caucasian - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000532 SNU61 1660035.0 Male asian - liver Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000552 HT29 905939.0 Female caucasian Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000565 RCM1 909263.0 Female - Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000651 SW620 905962.0 Male caucasian - lymph_node Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000680 SW948 909757.0 Female caucasian Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000683 SNU503 - Male asian - abdomen Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000708 SNU283 1659929.0 Female asian - abdomen Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000722 SNUC1 910905.0 Male asian - abdomen Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000798 CL40 1240124.0 Female - Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000820 SW403 - Female caucasian Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000842 SW480 - Male caucasian - lymph_node Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000895 CL34 1290771.0 Female - - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000926 HT55 907287.0 Unknown - Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000935 MDST8 1240173.0 Unknown - Adherent large_intestine - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000943 RKO 909698.0 Unknown - Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000950 LOVO 907790.0 Male caucasian Adherent lymph_node Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000955 SNU407 1660034.0 Male asian - soft_tissue Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000957 LS180 998189.0 Female caucasian not found Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000958 SW48 909751.0 Female caucasian Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000959 SNUC4 - Male asian - large_intestine - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000963 CCK81 1240123.0 Female - - large_intestine Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000967 SNUC2A - Female asian - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000969 KM12 905989.0 Unknown - Adherent large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000970 SNUC5 1674021.0 Female asian - Colon - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000971 HCT116 905936.0 Male - - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000982 GP2D - Female - - Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000985 LS411N 907794.0 Male caucasian - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000986 HT115 907289.0 Unknown - Adherent Colon - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000989 SNU175 1659928.0 Female asian - abdomen Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000991 SNU81 1660036.0 Male asian - Colon - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000997 HCT15 905937.0 Male - - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000998 CW2 910554.0 Female - - large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-000999 SNU1040 1659823.0 Male asian - Colon - Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-001061 DLD1 - Male - not found large_intestine Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-001345 GP5D 907291.0 Female - Adherent Colon Primary Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-001399 SW626 909753.0 Female - - ovary Metastasis Colon/Colorectal Cancer COAD/READ
    Adj359 MBVis
    ACH-001454 C10 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001456 C125PM - Unknown - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001458 C75 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001459 C80 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001460 C84 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001461 C99 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-001786 SNU1544 - Female - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-002022 PMFKO14 - Female - - large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-002023 TGBC18TKB - Female - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-002024 ECC4 - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    ACH-002025 TT1TKB - Male - Adherent large_intestine Primary Colon/Colorectal Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

    License
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