To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Endometrial/Uterine Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 39 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000173 | JHUEM3 | - | Female | - | - | endometrium | - | Endometrial/Uterine Cancer | UCEC | |
| ACH-000192 | MFE280 | 908129.0 | Female | - | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000293 | KLE | 924187.0 | Female | caucasian | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000302 | SNU1077 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000397 | TEN | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000407 | SNU685 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000435 | EFE184 | - | Female | caucasian | - | ascites | Metastasis | Endometrial/Uterine Cancer | UCEC | |
| ACH-000831 | HEC50B | - | Female | asian | - | ascites | Metastasis | Endometrial/Uterine Cancer | UCEC | |
| ACH-000864 | COLO684 | 910691.0 | Female | - | Suspension | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000879 | MFE296 | 908130.0 | Female | caucasian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000909 | JHUEM2 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000913 | ESS1 | 907000.0 | Female | caucasian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000928 | JHUEM1 | - | Female | asian | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000940 | AN3CA | 910781.0 | Female | caucasian | - | endometrium | Metastasis | Endometrial/Uterine Cancer | UCEC | |
| ACH-000941 | HEC1B | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000946 | HEC265 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000954 | HEC1A | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000961 | ISHIKAWAHERAKLIO02ER | - | Female | - | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000965 | RL952 | 930082.0 | Female | caucasian | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000972 | HEC151 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000974 | SNGM | 909735.0 | Female | asian | - | lymph_node | Metastasis | Endometrial/Uterine Cancer | UCEC | |
| ACH-000978 | EN | 1240127.0 | Female | asian | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000984 | HEC6 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000988 | MFE319 | 1240174.0 | Female | - | Adherent | endometrium | - | Endometrial/Uterine Cancer | UCEC | |
| ACH-000990 | HEC108 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000993 | JHUEM7 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000994 | HEC59 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-000996 | HEC251 | - | Female | asian | - | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-001495 | EMTOKA | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-001517 | HEC1 | 907051.0 | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | UCEC | |
| ACH-001518 | HEC116 | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-001529 | JAR | 907175.0 | Male | - | Adherent | Placenta | Primary | Endometrial/Uterine Cancer | - | |
| ACH-001530 | JEG3 | 907176.0 | Male | - | Adherent | central_nervous_system | Metastasis | Endometrial/Uterine Cancer | - | |
| ACH-001651 | SKGI | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-001652 | SKGII | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-001655 | SKN | 1240215.0 | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-002026 | HHUA | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-002027 | HOUAI | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| ACH-002046 | HTMMT | - | Female | - | Adherent | endometrium | Primary | Endometrial/Uterine Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |