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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Endometrial Uterine cancer networks

    Data sets 1 Networks Single-sample 39

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Endometrial/Uterine Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 39 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000173 JHUEM3 - Female - - endometrium - Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000192 MFE280 908129.0 Female - - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000293 KLE 924187.0 Female caucasian Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000302 SNU1077 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000397 TEN - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000407 SNU685 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000435 EFE184 - Female caucasian - ascites Metastasis Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000831 HEC50B - Female asian - ascites Metastasis Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000864 COLO684 910691.0 Female - Suspension endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000879 MFE296 908130.0 Female caucasian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000909 JHUEM2 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000913 ESS1 907000.0 Female caucasian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000928 JHUEM1 - Female asian Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000940 AN3CA 910781.0 Female caucasian - endometrium Metastasis Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000941 HEC1B - Female - Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000946 HEC265 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000954 HEC1A - Female - Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000961 ISHIKAWAHERAKLIO02ER - Female - - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000965 RL952 930082.0 Female caucasian Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000972 HEC151 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000974 SNGM 909735.0 Female asian - lymph_node Metastasis Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000978 EN 1240127.0 Female asian Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000984 HEC6 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000988 MFE319 1240174.0 Female - Adherent endometrium - Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000990 HEC108 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000993 JHUEM7 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000994 HEC59 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-000996 HEC251 - Female asian - endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-001495 EMTOKA - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001517 HEC1 907051.0 Female - Adherent endometrium Primary Endometrial/Uterine Cancer UCEC
    Adj359 MBVis
    ACH-001518 HEC116 - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001529 JAR 907175.0 Male - Adherent Placenta Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001530 JEG3 907176.0 Male - Adherent central_nervous_system Metastasis Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001651 SKGI - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001652 SKGII - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-001655 SKN 1240215.0 Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-002026 HHUA - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-002027 HOUAI - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    ACH-002046 HTMMT - Female - Adherent endometrium Primary Endometrial/Uterine Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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