To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Engineered | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 13 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000049 | HEKTE | - | Unknown | - | - | kidney | - | Engineered | KIRC | |
| ACH-000064 | SALE | - | Unknown | - | - | lung | - | Engineered | - | |
| ACH-000170 | PRECLH | - | Unknown | - | - | prostate | - | Engineered | PRAD | |
| ACH-000494 | OELE | - | Unknown | - | - | ovary | - | Engineered | OV | |
| ACH-000642 | HMEL | - | Unknown | - | - | breast | - | Engineered | BRCA | |
| ACH-001142 | NHAHTDD | - | Unknown | - | - | central_nervous_system | - | Engineered | - | |
| ACH-001310 | HA1E | - | Unknown | - | Adherent | kidney | - | Engineered | - | |
| ACH-002462 | RPE1SS48 | - | Female | - | Adherent | eye | - | Engineered | - | |
| ACH-002463 | RPE1SS77 | - | Female | - | Adherent | eye | - | Engineered | - | |
| ACH-002464 | RPE1SS6 | - | Female | - | Adherent | eye | - | Engineered | - | |
| ACH-002466 | RPE1SS111 | - | Female | - | Adherent | eye | - | Engineered | - | |
| ACH-002467 | RPE1SS51 | - | Female | - | Adherent | eye | - | Engineered | - | |
| ACH-002475 | HAP1 | - | Male | - | Adherent | bone_marrow | - | Engineered | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |