To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Esophageal Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 32 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000216 | JHESOAD1 | - | Male | - | - | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000305 | ECGI10 | 753555.0 | Male | - | - | lymph_node | - | Esophageal Cancer | ESCA | |
| ACH-000318 | TE10 | 753622.0 | Male | - | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000353 | TE15 | 753614.0 | Female | - | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000383 | OE33 | 910549.0 | Female | caucasian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000408 | TE5 | 735784.0 | Female | - | - | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000452 | TE8 | 753623.0 | Male | - | - | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000488 | TE11 | 946354.0 | Male | - | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000544 | OE21 | 1298359.0 | Male | - | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000561 | TDOTT | 1299064.0 | Male | - | - | bone | Metastasis | Esophageal Cancer | ESCA | |
| ACH-000605 | TE6 | 946355.0 | Male | - | Adherent | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000637 | KYSE520 | 753575.0 | Female | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000647 | TE1 | 753621.0 | Male | - | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000679 | OE19 | 910079.0 | Male | - | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000693 | KYSE180 | 907318.0 | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000694 | TE9 | 946353.0 | Male | - | Adherent | pleural_effusion | Metastasis | Esophageal Cancer | ESCA | |
| ACH-000717 | COLO680N | 906817.0 | Female | african_american | - | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000726 | TE14 | - | Male | - | - | oesophagus | - | Esophageal Cancer | ESCA | |
| ACH-000777 | KYSE30 | - | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000784 | KYSE70 | 753576.0 | Male | asian | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000809 | KYSE410 | 753574.0 | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000823 | KYSE140 | 753573.0 | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000824 | KYSE510 | 907321.0 | Female | asian | - | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000855 | KYSE150 | 907317.0 | Female | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000865 | KYSE450 | 907320.0 | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000873 | KYSE270 | 907319.0 | Male | asian | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-000917 | TE4 | 1503371.0 | Female | - | - | lymph_node | - | Esophageal Cancer | ESCA | |
| ACH-001368 | OACM51 | 1503363.0 | Female | - | Suspension | lymph_node | Metastasis | Esophageal Cancer | ESCA | |
| ACH-001496 | ESO26 | 1503366.0 | Male | - | Loosely Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-001497 | ESO51 | 1503367.0 | Male | - | Suspension | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-001500 | FLO1 | 1503361.0 | Male | - | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| ACH-001654 | SKGT4 | 1503365.0 | Male | - | Adherent | oesophagus | Primary | Esophageal Cancer | ESCA | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |