To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
# | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Eye Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 9 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
---|---|---|---|---|---|---|---|---|---|---|
ACH-001295 | Y79 | - | Female | - | Suspension | eye | - | Eye Cancer | - | |
ACH-001421 | WERIRB1 | - | Female | - | Suspension | eye | Primary | Eye Cancer | - | |
ACH-001441 | 921 | - | Female | - | - | uvea | Metastasis | Eye Cancer | - | |
ACH-001554 | MEL202 | - | Female | - | Adherent | uvea | Primary | Eye Cancer | - | |
ACH-002011 | MP46 | - | Male | - | - | uvea | Primary | Eye Cancer | - | |
ACH-002015 | MEL285 | - | Female | - | Adherent | uvea | Primary | Eye Cancer | - | |
ACH-002016 | MEL290 | - | Female | - | Adherent | uvea | Primary | Eye Cancer | - | |
ACH-002017 | OMM1 | - | Male | - | Adherent | skin | Metastasis | Eye Cancer | - | |
ACH-002018 | OMM25 | - | Male | - | Adherent | liver | Metastasis | Eye Cancer | - | |
DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |