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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Fibroblast cancer networks

    Data sets 1 Networks Single-sample 39

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Fibroblast LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 39 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000043 HS895T - Female caucasian - fibroblast Metastasis Fibroblast SKCM
    Adj359 MBVis
    ACH-000063 HS616T - Male caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000071 HS706T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000079 TE125T - Female caucasian - fibroblast - Fibroblast SARC
    Adj359 MBVis
    ACH-000083 HS281T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000088 HS172T - Male caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000119 HS863T - Female caucasian - fibroblast - Fibroblast SARC
    Adj359 MBVis
    ACH-000125 TO175T - Male caucasian - lymph_node Metastasis Fibroblast -
    Adj359 MBVis
    ACH-000131 HS229T - Male caucasian - fibroblast Primary Fibroblast LUAD
    Adj359 MBVis
    ACH-000133 HS729 - Male caucasian Adherent fibroblast Primary Fibroblast SARC
    Adj359 MBVis
    ACH-000134 HS274T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000135 HS940T 1298145.0 Male caucasian - fibroblast Primary Fibroblast SKCM
    Adj359 MBVis
    ACH-000154 HS888T - Male caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000165 HS751T - Male - - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000175 TE159T - Male caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000180 HS839T - Female caucasian - fibroblast - Fibroblast SKCM
    Adj359 MBVis
    ACH-000184 HS343T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000185 HS737T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000194 HS934T - Female caucasian - fibroblast Primary Fibroblast SKCM
    Adj359 MBVis
    ACH-000199 HS255T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000214 HS675T - Male caucasian - fibroblast - Fibroblast COAD/READ
    Adj359 MBVis
    ACH-000224 HS819T - Male caucasian - fibroblast - Fibroblast SARC
    Adj359 MBVis
    ACH-000229 HS822T - Female caucasian - fibroblast Primary Fibroblast -
    Adj359 MBVis
    ACH-000230 HS742T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000240 HS600T - Male - - fibroblast Primary Fibroblast -
    Adj359 MBVis
    ACH-000275 HS834T - Female - - lymph_node Metastasis Fibroblast -
    Adj359 MBVis
    ACH-000284 HS840T - Male caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000306 HS688AT - Male caucasian - fibroblast Primary Fibroblast SKCM
    Adj359 MBVis
    ACH-000340 HS870T - Male - - fibroblast - Fibroblast SARC
    Adj359 MBVis
    ACH-000413 HS739T - Female asian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000526 HS821T - Female caucasian - fibroblast Primary Fibroblast -
    Adj359 MBVis
    ACH-000529 T173 - Unknown - - fibroblast - Fibroblast SARC
    Adj359 MBVis
    ACH-000531 RS5 - Male - - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000539 HS618T - Female caucasian - fibroblast Primary Fibroblast LUAD
    Adj359 MBVis
    ACH-000540 HS606T - Female caucasian - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000742 DM3 - Male - - fibroblast - Fibroblast -
    Adj359 MBVis
    ACH-000797 HLFA - Female african_american - fibroblast Primary Fibroblast LUSC
    Adj359 MBVis
    ACH-000850 HS698T - Male american_indian - soft_tissue Metastasis Fibroblast COAD/READ
    Adj359 MBVis
    ACH-001207 TIG3TD - Unknown - - fibroblast - Fibroblast -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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