To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Fibroblast | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 43 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000043 | HS895T | - | Female | caucasian | - | fibroblast | Metastasis | Fibroblast | SKCM | |
| ACH-000063 | HS616T | - | Male | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000071 | HS706T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000079 | TE125T | - | Female | caucasian | - | fibroblast | - | Fibroblast | SARC | |
| ACH-000083 | HS281T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000088 | HS172T | - | Male | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000119 | HS863T | - | Female | caucasian | - | fibroblast | - | Fibroblast | SARC | |
| ACH-000125 | TO175T | - | Male | caucasian | - | lymph_node | Metastasis | Fibroblast | - | |
| ACH-000131 | HS229T | - | Male | caucasian | - | fibroblast | Primary | Fibroblast | LUAD | |
| ACH-000133 | HS729 | - | Male | caucasian | Adherent | fibroblast | Primary | Fibroblast | SARC | |
| ACH-000134 | HS274T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000135 | HS940T | 1298145.0 | Male | caucasian | - | fibroblast | Primary | Fibroblast | SKCM | |
| ACH-000154 | HS888T | - | Male | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000165 | HS751T | - | Male | - | - | fibroblast | - | Fibroblast | - | |
| ACH-000175 | TE159T | - | Male | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000180 | HS839T | - | Female | caucasian | - | fibroblast | - | Fibroblast | SKCM | |
| ACH-000184 | HS343T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000185 | HS737T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000194 | HS934T | - | Female | caucasian | - | fibroblast | Primary | Fibroblast | SKCM | |
| ACH-000199 | HS255T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000214 | HS675T | - | Male | caucasian | - | fibroblast | - | Fibroblast | COAD/READ | |
| ACH-000224 | HS819T | - | Male | caucasian | - | fibroblast | - | Fibroblast | SARC | |
| ACH-000229 | HS822T | - | Female | caucasian | - | fibroblast | Primary | Fibroblast | - | |
| ACH-000230 | HS742T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000240 | HS600T | - | Male | - | - | fibroblast | Primary | Fibroblast | - | |
| ACH-000275 | HS834T | - | Female | - | - | lymph_node | Metastasis | Fibroblast | - | |
| ACH-000284 | HS840T | - | Male | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000306 | HS688AT | - | Male | caucasian | - | fibroblast | Primary | Fibroblast | SKCM | |
| ACH-000340 | HS870T | - | Male | - | - | fibroblast | - | Fibroblast | SARC | |
| ACH-000413 | HS739T | - | Female | asian | - | fibroblast | - | Fibroblast | - | |
| ACH-000526 | HS821T | - | Female | caucasian | - | fibroblast | Primary | Fibroblast | - | |
| ACH-000529 | T173 | - | Unknown | - | - | fibroblast | - | Fibroblast | SARC | |
| ACH-000531 | RS5 | - | Male | - | - | fibroblast | - | Fibroblast | - | |
| ACH-000539 | HS618T | - | Female | caucasian | - | fibroblast | Primary | Fibroblast | LUAD | |
| ACH-000540 | HS606T | - | Female | caucasian | - | fibroblast | - | Fibroblast | - | |
| ACH-000742 | DM3 | - | Male | - | - | fibroblast | - | Fibroblast | - | |
| ACH-000797 | HLFA | - | Female | african_american | - | fibroblast | Primary | Fibroblast | LUSC | |
| ACH-000850 | HS698T | - | Male | american_indian | - | soft_tissue | Metastasis | Fibroblast | COAD/READ | |
| ACH-001207 | TIG3TD | - | Unknown | - | - | fibroblast | - | Fibroblast | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |