To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Gallbladder Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 6 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000141 | SNU308 | - | Unknown | - | - | biliary_tract | - | Gallbladder Cancer | - | |
| ACH-001607 | NOZ | - | Female | - | Adherent | ascites | Metastasis | Gallbladder Cancer | - | |
| ACH-001619 | OCUG1 | - | Male | - | Adherent | ascites | Metastasis | Gallbladder Cancer | - | |
| ACH-001850 | G415 | - | Male | - | Adherent | ascites | Metastasis | Gallbladder Cancer | - | |
| ACH-001861 | TGBC1TKB | - | Female | - | Adherent | lymph_node | Metastasis | Gallbladder Cancer | - | |
| ACH-001961 | GB2 | - | Unknown | - | Adherent | biliary_tract | Metastasis | Gallbladder Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |