To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Gastric Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 40 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000110 | NCCSTCK140 | - | Female | - | - | stomach | - | Gastric Cancer | STAD | |
| ACH-000144 | RERFGC1B | 1240209.0 | Male | asian | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000225 | ECC12 | 906849.0 | Male | - | - | stomach | - | Gastric Cancer | STAD | |
| ACH-000239 | HUG1N | - | Male | asian | - | stomach | Metastasis | Gastric Cancer | STAD | |
| ACH-000247 | OCUM1 | 1298358.0 | Female | asian | - | stomach | Metastasis | Gastric Cancer | STAD | |
| ACH-000255 | LMSU | - | Female | - | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000303 | SNU5 | 908445.0 | Female | asian | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000325 | SNU620 | - | Female | asian | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000344 | SNU668 | - | Male | asian | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000351 | MKN1 | 908138.0 | Male | asian | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000356 | MKN45 | 925340.0 | Female | asian | - | liver | Metastasis | Gastric Cancer | STAD | |
| ACH-000427 | NCIN87 | 908461.0 | Male | - | Adherent | liver | Metastasis | Gastric Cancer | STAD | |
| ACH-000466 | SNU216 | - | Female | asian | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000485 | GSU | - | Male | - | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000507 | KE39 | - | Male | asian | Adherent | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000538 | HUTU80 | 907073.0 | Male | caucasian | - | small_intestine | Primary | Gastric Cancer | - | |
| ACH-000560 | ECC10 | 906848.0 | Male | - | - | liver | - | Gastric Cancer | STAD | |
| ACH-000581 | SNU16 | 908446.0 | Female | asian | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000616 | HS746T | 1240151.0 | Male | caucasian | Adherent | soft_tissue | Metastasis | Gastric Cancer | STAD | |
| ACH-000633 | FU97 | 1290806.0 | Female | asian | - | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000674 | NUGC4 | 1298357.0 | Female | asian | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000678 | MKN7 | 924250.0 | Male | asian | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000736 | SNU601 | - | Male | asian | - | ascites | Metastasis | Gastric Cancer | STAD | |
| ACH-000746 | GSS | - | Male | - | - | liver | Metastasis | Gastric Cancer | STAD | |
| ACH-000758 | MKN74 | - | Male | asian | - | liver | Metastasis | Gastric Cancer | STAD | |
| ACH-000761 | NUGC2 | - | Female | - | - | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000764 | SH10TC | - | Unknown | - | Adherent | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000793 | KATOIII | 907276.0 | Male | asian | Mixed adherent and suspension | pleural_effusion | Metastasis | Gastric Cancer | STAD | |
| ACH-000847 | HGC27 | 907055.0 | Unknown | asian | Adherent | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-000880 | AGS | 906790.0 | Female | caucasian | Adherent | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000898 | SNU719 | - | Male | asian | - | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000908 | SNU520 | - | Female | asian | - | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000911 | NUGC3 | 908455.0 | Male | - | - | soft_tissue | Metastasis | Gastric Cancer | STAD | |
| ACH-000919 | IM95 | 1240155.0 | Male | asian | Adherent | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000932 | SNU1 | 908444.0 | Male | asian | - | stomach | Metastasis | Gastric Cancer | STAD | |
| ACH-000948 | 2313287 | 910924.0 | Male | - | - | stomach | Primary | Gastric Cancer | STAD | |
| ACH-000949 | TGBC11TKB | 909770.0 | Female | - | Suspension | lymph_node | Metastasis | Gastric Cancer | STAD | |
| ACH-001653 | SKGT2 | 1503364.0 | Male | - | Adherent | stomach | Primary | Gastric Cancer | STAD | |
| ACH-001664 | SNU638 | - | Male | - | Adherent | ascites | Metastasis | Gastric Cancer | - | |
| ACH-002446 | CCLFUPGI0005T | - | Unknown | - | Adherent | pleura | Metastasis | Gastric Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |