Home
  • Networks
    • Small molecules

    • Cancer

    • Tissues

    • Cell lines
  • Analysis
    • Drug repurposing (CLUEreg)
    • Enrichment analysis
    • Upload your network
    • Network comparison
    • CCLE map
  • Help
    • GitHub
    • API
    • Changelog
    • Download
    • Contact
  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Head and Neck cancer networks

    Data sets 1 Networks Single-sample 53

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Head and Neck Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 53 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000181 SCC9 909709.0 Male - - upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000188 SCC25 910701.0 Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000207 DETROIT562 906837.0 Female caucasian - pleural_effusion Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000228 BICR31 1290725.0 Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000238 SCC4 910904.0 Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000254 SCC15 910911.0 Male - - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000415 BICR6 - Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000472 HSC2 753562.0 Male - - upper_aerodigestive_tract Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000500 SNU46 - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000503 BICR16 - Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000518 CAL33 753541.0 Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000546 HSC4 907062.0 Male - - upper_aerodigestive_tract Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000548 BHY 753535.0 Male asian - upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000549 SNU1076 - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000606 PECAPJ34CLONEC12 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000618 SNU1041 - Male - - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000619 PECAPJ15 1240207.0 Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000630 YD8 - Female asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000682 SNU1066 - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000692 SNU899 - Male asian - upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000715 SNU1214 - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000723 YD10B - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000732 PECAPJ41CLONED2 - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000735 PECAPJ49 - Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000740 A253 906794.0 Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000762 YD38 - Male asian - upper_aerodigestive_tract - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000771 BICR56 - Female caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000778 HSC3 907061.0 Male - - upper_aerodigestive_tract Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000794 BICR22 1240121.0 Male caucasian Adherent lymph_node Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000832 CAL27 910916.0 Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000836 YD15 - Male asian - salivary_gland - Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-000846 FADU 906863.0 Male caucasian Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001228 UPCISCC152 - Male - not found upper_aerodigestive_tract - Head and Neck Cancer -
    Adj359 MBVis
    ACH-001229 UPCISCC154 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001332 BICR78 1240122.0 Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001346 H103 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001347 H157 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001385 RPMI2650 909700.0 Male - Adherent pleural_effusion Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001509 H357 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001510 H376 - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001511 H413 - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001542 KON 1298215.0 Male - Adherent upper_aerodigestive_tract Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001543 KOSC2CL343 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001625 OSC19 1298362.0 Male - - lymph_node Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001626 OSC20 1240196.0 Female - - lymph_node Metastasis Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-001690 UPCISCC026 - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001692 UPCISCC040 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001694 UPCISCC074 - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001698 UPCISCC116 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-001699 UPCISCC131 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-002029 SAS - Female - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    ACH-002044 HSQ89 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer -
    Adj359 MBVis
    ACH-002045 HO1U1 - Male - Adherent upper_aerodigestive_tract Primary Head and Neck Cancer HNSC
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

    License
    Share