To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Head and Neck Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 53 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000181 | SCC9 | 909709.0 | Male | - | - | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000188 | SCC25 | 910701.0 | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000207 | DETROIT562 | 906837.0 | Female | caucasian | - | pleural_effusion | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-000228 | BICR31 | 1290725.0 | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000238 | SCC4 | 910904.0 | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000254 | SCC15 | 910911.0 | Male | - | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000415 | BICR6 | - | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000472 | HSC2 | 753562.0 | Male | - | - | upper_aerodigestive_tract | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-000500 | SNU46 | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000503 | BICR16 | - | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000518 | CAL33 | 753541.0 | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000546 | HSC4 | 907062.0 | Male | - | - | upper_aerodigestive_tract | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-000548 | BHY | 753535.0 | Male | asian | - | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000549 | SNU1076 | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000606 | PECAPJ34CLONEC12 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000618 | SNU1041 | - | Male | - | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000619 | PECAPJ15 | 1240207.0 | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000630 | YD8 | - | Female | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000682 | SNU1066 | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000692 | SNU899 | - | Male | asian | - | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000715 | SNU1214 | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000723 | YD10B | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000732 | PECAPJ41CLONED2 | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000735 | PECAPJ49 | - | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000740 | A253 | 906794.0 | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000762 | YD38 | - | Male | asian | - | upper_aerodigestive_tract | - | Head and Neck Cancer | HNSC | |
| ACH-000771 | BICR56 | - | Female | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000778 | HSC3 | 907061.0 | Male | - | - | upper_aerodigestive_tract | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-000794 | BICR22 | 1240121.0 | Male | caucasian | Adherent | lymph_node | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-000832 | CAL27 | 910916.0 | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-000836 | YD15 | - | Male | asian | - | salivary_gland | - | Head and Neck Cancer | HNSC | |
| ACH-000846 | FADU | 906863.0 | Male | caucasian | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-001228 | UPCISCC152 | - | Male | - | not found | upper_aerodigestive_tract | - | Head and Neck Cancer | - | |
| ACH-001229 | UPCISCC154 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001332 | BICR78 | 1240122.0 | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-001346 | H103 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001347 | H157 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001385 | RPMI2650 | 909700.0 | Male | - | Adherent | pleural_effusion | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-001509 | H357 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001510 | H376 | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001511 | H413 | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001542 | KON | 1298215.0 | Male | - | Adherent | upper_aerodigestive_tract | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-001543 | KOSC2CL343 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001625 | OSC19 | 1298362.0 | Male | - | - | lymph_node | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-001626 | OSC20 | 1240196.0 | Female | - | - | lymph_node | Metastasis | Head and Neck Cancer | HNSC | |
| ACH-001690 | UPCISCC026 | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001692 | UPCISCC040 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001694 | UPCISCC074 | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001698 | UPCISCC116 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-001699 | UPCISCC131 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-002029 | SAS | - | Female | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| ACH-002044 | HSQ89 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | - | |
| ACH-002045 | HO1U1 | - | Male | - | Adherent | upper_aerodigestive_tract | Primary | Head and Neck Cancer | HNSC | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |