To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Kidney Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 37 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000016 | SLR21 | - | Unknown | - | - | kidney | Metastasis | Kidney Cancer | KIRC | |
| ACH-000046 | ACHN | 905950.0 | Male | caucasian | - | pleural_effusion | Metastasis | Kidney Cancer | KIRC | |
| ACH-000127 | SLR20 | - | Unknown | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000159 | OSRC2 | 909250.0 | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000171 | VMRCRCZ | 909781.0 | Unknown | asian | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000189 | RCC10RGB | 909974.0 | Male | asian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000234 | CAKI2 | - | Male | caucasian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000246 | SLR23 | - | Unknown | - | Adherent | kidney | Metastasis | Kidney Cancer | KIRC | |
| ACH-000250 | KMRC20 | 1298169.0 | Unknown | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000262 | UOK101 | - | Female | - | not found | kidney | - | Kidney Cancer | KIRC | |
| ACH-000272 | SLR24 | - | Unknown | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000300 | SLR25 | - | Unknown | - | - | kidney | Metastasis | Kidney Cancer | KIRC | |
| ACH-000313 | KMRC3 | - | Male | asian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000317 | TUHR14TKB | - | Male | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000375 | G402 | 907298.0 | Female | caucasian | - | kidney | Primary | Kidney Cancer | SARC | |
| ACH-000385 | SKRC20 | - | Unknown | - | not found | kidney | - | Kidney Cancer | KIRC | |
| ACH-000411 | 769P | 910922.0 | Female | caucasian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000428 | UO31 | 905981.0 | Unknown | - | - | kidney | - | Kidney Cancer | KIRC | |
| ACH-000429 | A704 | 910920.0 | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000433 | CAKI1 | 905963.0 | Male | caucasian | Adherent | skin | Metastasis | Kidney Cancer | KIRC | |
| ACH-000457 | CAL54 | 910952.0 | Male | - | - | pleural_effusion | Metastasis | Kidney Cancer | KIRC | |
| ACH-000459 | TUHR10TKB | - | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000484 | VMRCRCW | 1240224.0 | Male | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000495 | TUHR4TKB | - | Male | - | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000513 | SNU1272 | - | Female | asian | - | kidney | - | Kidney Cancer | KIRC | |
| ACH-000555 | A498 | 905948.0 | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000600 | SLR26 | - | Unknown | - | not found | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000649 | 786O | 905947.0 | Male | caucasian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000684 | KMRC1 | 1298168.0 | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000709 | KMRC2 | - | Male | asian | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000792 | BFTC909 | 910698.0 | Male | asian | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-000907 | SNU349 | - | Male | asian | Adherent | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-001163 | CCLFPEDS0001T | - | Male | - | not found | kidney | Metastasis | Kidney Cancer | - | |
| ACH-001194 | SKRC31 | - | Unknown | - | not found | lung | Metastasis | Kidney Cancer | KIRC | |
| ACH-001398 | SW156 | 1240220.0 | Male | - | - | kidney | Primary | Kidney Cancer | KIRC | |
| ACH-001687 | UMRC3 | - | Unknown | - | Adherent | kidney | Primary | Kidney Cancer | - | |
| ACH-001688 | UMRC7 | - | Male | - | Adherent | kidney | Primary | Kidney Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |