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  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Liposarcoma cancer networks

    Data sets 1 Networks Single-sample 10

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Liposarcoma LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 10 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-001540 KMLS1 - Unknown - - soft_tissue Primary Liposarcoma -
    Adj359 MBVis
    ACH-001791 LPS6 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001793 LPS27 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001794 93T449 - Unknown - Adherent soft_tissue Primary Liposarcoma -
    Adj359 MBVis
    ACH-001795 94T778 - Female - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001796 95T1000 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001799 LPS141 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001802 LPS853 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001804 LPS510 - Unknown - Adherent soft_tissue - Liposarcoma -
    Adj359 MBVis
    ACH-001807 LPS067 - Unknown - - soft_tissue Primary Liposarcoma -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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