To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Liposarcoma | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 10 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-001540 | KMLS1 | - | Unknown | - | - | soft_tissue | Primary | Liposarcoma | - | |
| ACH-001791 | LPS6 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001793 | LPS27 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001794 | 93T449 | - | Unknown | - | Adherent | soft_tissue | Primary | Liposarcoma | - | |
| ACH-001795 | 94T778 | - | Female | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001796 | 95T1000 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001799 | LPS141 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001802 | LPS853 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001804 | LPS510 | - | Unknown | - | Adherent | soft_tissue | - | Liposarcoma | - | |
| ACH-001807 | LPS067 | - | Unknown | - | - | soft_tissue | Primary | Liposarcoma | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |