To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Liver Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 24 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000217 | JHH6 | 1240159.0 | Female | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000221 | SNU398 | 1240217.0 | Male | asian | Mixed adherent and suspension | liver | Primary | Liver Cancer | LIHC | |
| ACH-000316 | SNU886 | - | Male | asian | - | liver | - | Liver Cancer | LIHC | |
| ACH-000361 | SKHEP1 | 909719.0 | Male | caucasian | Adherent | ascites | Metastasis | Liver Cancer | LIHC | |
| ACH-000393 | HLF | - | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000420 | SNU449 | 909738.0 | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000422 | SNU475 | 909739.0 | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000471 | LI7 | - | Male | - | - | liver | - | Liver Cancer | LIHC | |
| ACH-000475 | HUH1 | 1298146.0 | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000476 | JHH4 | 1240158.0 | Male | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000478 | SNU387 | 909736.0 | Female | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000480 | HUH7 | 907071.0 | Male | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000483 | SNU182 | 1240216.0 | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000493 | SNU423 | 909737.0 | Male | asian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000537 | SNU761 | - | Male | asian | - | liver | - | Liver Cancer | LIHC | |
| ACH-000577 | JHH2 | 1240157.0 | Male | asian | Adherent | ascites | Metastasis | Liver Cancer | LIHC | |
| ACH-000620 | JHH1 | 1298151.0 | Male | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000625 | HEP3B217 | 1240147.0 | Male | african_american | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000671 | HUH6 | - | Male | asian | - | liver | - | Liver Cancer | LIHC | |
| ACH-000686 | SNU878 | - | Female | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000734 | JHH5 | - | Male | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-000739 | HEPG2 | - | Male | caucasian | Adherent | liver | Primary | Liver Cancer | LIHC | |
| ACH-000848 | JHH7 | 1240160.0 | Male | asian | - | liver | Primary | Liver Cancer | LIHC | |
| ACH-001318 | PLCPRF5 | - | Male | - | Adherent | liver | Primary | Liver Cancer | LIHC | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |