Lung cancer networks

To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

Variable description

You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

DepMap ID
Cell nameCOSMIC ID
SexRaceCultureCollection site
Type
Cancer
TCGA code
Network
ACH-000010 NCIH2077 - Male - - lung - Lung Cancer -
Adj359 MBVis
ACH-000012 HCC827 1240146.0 Female caucasian Adherent lung Primary Lung Cancer LUAD
Adj359 MBVis
ACH-000015 NCIH1581 908471.0 Male caucasian Mixed adherent and suspension lung Primary Lung Cancer -
Adj359 MBVis
ACH-000021 NCIH1693 687802.0 Female caucasian Adherent lymph_node Metastasis Lung Cancer LUAD
Adj359 MBVis
ACH-000029 HCC827GR5 - Female - Adherent lung Primary Lung Cancer -
Adj359 MBVis
ACH-000030 PC14 753608.0 Male asian Adherent lung Primary Lung Cancer LUAD
Adj359 MBVis
ACH-000033 NCIH1819 - Female - - lymph_node Metastasis Lung Cancer -
Adj359 MBVis
ACH-000035 NCIH1650 687800.0 Male caucasian Adherent pleural_effusion Metastasis Lung Cancer LUAD
Adj359 MBVis
ACH-000062 RERFLCMS 910931.0 Male asian - lung Primary Lung Cancer LUAD
Adj359 MBVis
ACH-000066 HCC4006 - Male caucasian - pleural_effusion Metastasis Lung Cancer LUAD
Adj359 MBVis
Showing 1 to 10 of 206 entries