To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Lymphoma | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 82 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000038 | EHEB | 906854.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | CLL | |
| ACH-000053 | KARPAS299 | 907273.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000056 | DOHH2 | 906842.0 | Male | - | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000061 | HH | 907056.0 | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | ALL | |
| ACH-000068 | REC1 | - | Male | - | - | lymph_node | - | Lymphoma | DLBC | |
| ACH-000069 | HS611T | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000073 | GRANTA519 | 1303897.0 | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | Primary | Lymphoma | DLBC | |
| ACH-000077 | MJ | - | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000106 | JVM2 | 907269.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | CLL | |
| ACH-000124 | OCILY19 | 1330984.0 | Female | - | Suspension | bone_marrow | Primary | Lymphoma | DLBC | |
| ACH-000140 | PFEIFFER | - | Male | caucasian | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000157 | A4FUK | 910934.0 | Female | asian | - | ascites | Primary | Lymphoma | DLBC | |
| ACH-000158 | OCILY3 | - | Male | - | - | bone_marrow | Primary | Lymphoma | DLBC | |
| ACH-000162 | GA10 | 1303896.0 | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000190 | HDMYZ | 907050.0 | Male | - | - | pleural_effusion | - | Lymphoma | - | |
| ACH-000206 | C8166 | - | Unknown | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000220 | MINO | - | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000226 | SUPM2 | 1331040.0 | Female | - | Suspension | central_nervous_system | - | Lymphoma | - | |
| ACH-000233 | DEL | 906836.0 | Male | - | Suspension | pleural_effusion | - | Lymphoma | - | |
| ACH-000245 | BL41 | 910706.0 | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000267 | HDLM2 | 924110.0 | Male | - | Suspension | pleural_effusion | - | Lymphoma | - | |
| ACH-000271 | SUDHL10 | 1331033.0 | Male | - | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000285 | TOLEDO | - | Female | caucasian | - | haematopoietic_and_lymphoid_tissue | Primary | Lymphoma | DLBC | |
| ACH-000287 | NUDUL1 | 1330982.0 | Male | caucasian | - | central_nervous_system | - | Lymphoma | DLBC | |
| ACH-000315 | KARPAS422 | 907274.0 | Female | - | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000334 | DB | 906832.0 | Male | caucasian | Suspension | ascites | Metastasis | Lymphoma | DLBC | |
| ACH-000338 | SR786 | 905965.0 | Male | - | - | pleural_effusion | Primary | Lymphoma | - | |
| ACH-000357 | JEKO1 | 1327765.0 | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000365 | SUDHL4 | 1331035.0 | Male | - | Suspension | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000371 | RL | 910861.0 | Male | caucasian | Suspension | ascites | - | Lymphoma | DLBC | |
| ACH-000388 | NUDHL1 | - | Male | caucasian | - | lymph_node | Metastasis | Lymphoma | DLBC | |
| ACH-000398 | RI1 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000402 | BL70 | - | Male | caucasian | Adherent | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000440 | CA46 | 910703.0 | Male | - | - | ascites | - | Lymphoma | DLBC | |
| ACH-000509 | HUT78 | - | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000534 | WSUDLCL2 | 1331050.0 | Male | caucasian | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000567 | ST486 | 910906.0 | Female | - | - | ascites | - | Lymphoma | DLBC | |
| ACH-000583 | MC116 | 907799.0 | Male | - | Suspension | pleural_effusion | - | Lymphoma | DLBC | |
| ACH-000611 | SUDHL6 | 1331037.0 | Male | - | - | ascites | Metastasis | Lymphoma | DLBC | |
| ACH-000612 | HUT102 | - | Male | african_american | - | lymph_node | - | Lymphoma | - | |
| ACH-000654 | RAJI | 909262.0 | Male | african | - | bone | - | Lymphoma | DLBC | |
| ACH-000656 | SUDHL8 | 1331038.0 | Male | - | - | pleural_effusion | Metastasis | Lymphoma | DLBC | |
| ACH-000660 | SUDHL5 | 1331036.0 | Female | - | - | lymph_node | Primary | Lymphoma | DLBC | |
| ACH-000664 | SUDHL1 | 909742.0 | Male | - | - | pleural_effusion | - | Lymphoma | - | |
| ACH-000687 | CI1 | - | Female | - | - | ascites | - | Lymphoma | DLBC | |
| ACH-000697 | A3KAW | 910935.0 | Female | - | Suspension | ascites | Primary | Lymphoma | DLBC | |
| ACH-000702 | L1236 | 1330935.0 | Male | - | Mixed adherent and suspension | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-000707 | P3HR1 | - | Male | african_american | - | ascites | - | Lymphoma | DLBC | |
| ACH-000754 | L428 | 907322.0 | Female | - | - | pleural_effusion | - | Lymphoma | - | |
| ACH-000773 | KIJK | - | Male | - | - | pleural_effusion | - | Lymphoma | - | |
| ACH-000786 | DAUDI | 906831.0 | Male | african | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000806 | L540 | 907323.0 | Female | - | - | bone_marrow | - | Lymphoma | - | |
| ACH-000815 | KMH2 | 909976.0 | Male | - | - | pleural_effusion | Metastasis | Lymphoma | - | |
| ACH-000877 | EB1 | - | Female | african_american | - | bone | Primary | Lymphoma | DLBC | |
| ACH-000914 | HT | 907063.0 | Male | caucasian | - | ascites | - | Lymphoma | DLBC | |
| ACH-000923 | BCP1 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-000944 | NAMALWA | 908159.0 | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Lymphoma | DLBC | |
| ACH-001057 | DERL2 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001060 | DL40 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001068 | FEPD | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001097 | KARPAS384 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001100 | KHYG | - | Unknown | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001111 | L82 | - | Female | - | not found | pleural_effusion | - | Lymphoma | - | |
| ACH-001119 | MAC2A | - | Male | - | not found | skin | - | Lymphoma | - | |
| ACH-001132 | MTA | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001134 | MYLA | - | Unknown | - | not found | haematopoietic_and_lymphoid_tissue | - | Lymphoma | - | |
| ACH-001147 | OCILY12 | - | Male | - | - | lymph_node | - | Lymphoma | - | |
| ACH-001148 | OCILY132 | - | Female | - | - | bone_marrow | - | Lymphoma | - | |
| ACH-001197 | SMZ1 | - | Male | - | not found | ascites | - | Lymphoma | - | |
| ACH-001450 | BLUE1 | - | Male | - | Suspension | bone_marrow | Primary | Lymphoma | - | |
| ACH-001498 | FARAGE | 1297449.0 | Female | - | Suspension | lymph_node | Metastasis | Lymphoma | DLBC | |
| ACH-001539 | KML1 | - | Female | - | Suspension | pleural_effusion | Primary | Lymphoma | - | |
| ACH-001616 | OCILY18 | - | Male | - | Suspension | pleural_effusion | Primary | Lymphoma | - | |
| ACH-001617 | OCILY7 | 1659819.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Lymphoma | DLBC | |
| ACH-001636 | RAMOS | - | Male | - | Suspension | ascites | Primary | Lymphoma | - | |
| ACH-001638 | RCK8 | 1330995.0 | Male | - | Suspension | ascites | Primary | Lymphoma | DLBC | |
| ACH-001642 | SCC3 | 910930.0 | Female | - | Suspension | pleural_effusion | Primary | Lymphoma | DLBC | |
| ACH-001677 | U2904 | - | Male | - | Suspension | pleural_effusion | Primary | Lymphoma | - | |
| ACH-001685 | UHO1 | - | Male | - | Suspension | pleural_effusion | Primary | Lymphoma | - | |
| ACH-001703 | VAL | 1331048.0 | Female | - | - | bone_marrow | Metastasis | Lymphoma | DLBC | |
| ACH-001709 | WSUNHL | 909785.0 | Female | - | Suspension | pleural_effusion | Primary | Lymphoma | - | |
| ACH-002062 | SLVL | - | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Lymphoma | DLBC | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |