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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Lymphoma cancer networks

    Data sets 1 Networks Single-sample 82

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Lymphoma LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 82 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000038 EHEB 906854.0 Female - - haematopoietic_and_lymphoid_tissue - Lymphoma CLL
    Adj359 MBVis
    ACH-000053 KARPAS299 907273.0 Male - Suspension haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000056 DOHH2 906842.0 Male - - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000061 HH 907056.0 Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma ALL
    Adj359 MBVis
    ACH-000068 REC1 - Male - - lymph_node - Lymphoma DLBC
    Adj359 MBVis
    ACH-000069 HS611T - Female - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000073 GRANTA519 1303897.0 Female caucasian - haematopoietic_and_lymphoid_tissue Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000077 MJ - Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000106 JVM2 907269.0 Female - - haematopoietic_and_lymphoid_tissue - Lymphoma CLL
    Adj359 MBVis
    ACH-000124 OCILY19 1330984.0 Female - Suspension bone_marrow Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000140 PFEIFFER - Male caucasian - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000157 A4FUK 910934.0 Female asian - ascites Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000158 OCILY3 - Male - - bone_marrow Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000162 GA10 1303896.0 Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000190 HDMYZ 907050.0 Male - - pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000206 C8166 - Unknown - Suspension haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000220 MINO - Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000226 SUPM2 1331040.0 Female - Suspension central_nervous_system - Lymphoma -
    Adj359 MBVis
    ACH-000233 DEL 906836.0 Male - Suspension pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000245 BL41 910706.0 Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000267 HDLM2 924110.0 Male - Suspension pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000271 SUDHL10 1331033.0 Male - - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000285 TOLEDO - Female caucasian - haematopoietic_and_lymphoid_tissue Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000287 NUDUL1 1330982.0 Male caucasian - central_nervous_system - Lymphoma DLBC
    Adj359 MBVis
    ACH-000315 KARPAS422 907274.0 Female - - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000334 DB 906832.0 Male caucasian Suspension ascites Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000338 SR786 905965.0 Male - - pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-000357 JEKO1 1327765.0 Female - Suspension haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000365 SUDHL4 1331035.0 Male - Suspension pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000371 RL 910861.0 Male caucasian Suspension ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000388 NUDHL1 - Male caucasian - lymph_node Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000398 RI1 - Female - - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000402 BL70 - Male caucasian Adherent haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000440 CA46 910703.0 Male - - ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000509 HUT78 - Male caucasian - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000534 WSUDLCL2 1331050.0 Male caucasian - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000567 ST486 910906.0 Female - - ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000583 MC116 907799.0 Male - Suspension pleural_effusion - Lymphoma DLBC
    Adj359 MBVis
    ACH-000611 SUDHL6 1331037.0 Male - - ascites Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000612 HUT102 - Male african_american - lymph_node - Lymphoma -
    Adj359 MBVis
    ACH-000654 RAJI 909262.0 Male african - bone - Lymphoma DLBC
    Adj359 MBVis
    ACH-000656 SUDHL8 1331038.0 Male - - pleural_effusion Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-000660 SUDHL5 1331036.0 Female - - lymph_node Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000664 SUDHL1 909742.0 Male - - pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000687 CI1 - Female - - ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000697 A3KAW 910935.0 Female - Suspension ascites Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000702 L1236 1330935.0 Male - Mixed adherent and suspension haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-000707 P3HR1 - Male african_american - ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000754 L428 907322.0 Female - - pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000773 KIJK - Male - - pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-000786 DAUDI 906831.0 Male african - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000806 L540 907323.0 Female - - bone_marrow - Lymphoma -
    Adj359 MBVis
    ACH-000815 KMH2 909976.0 Male - - pleural_effusion Metastasis Lymphoma -
    Adj359 MBVis
    ACH-000877 EB1 - Female african_american - bone Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-000914 HT 907063.0 Male caucasian - ascites - Lymphoma DLBC
    Adj359 MBVis
    ACH-000923 BCP1 - Male - - haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-000944 NAMALWA 908159.0 Female - Suspension haematopoietic_and_lymphoid_tissue - Lymphoma DLBC
    Adj359 MBVis
    ACH-001057 DERL2 - Male - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001060 DL40 - Female - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001068 FEPD - Female - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001097 KARPAS384 - Male - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001100 KHYG - Unknown - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001111 L82 - Female - not found pleural_effusion - Lymphoma -
    Adj359 MBVis
    ACH-001119 MAC2A - Male - not found skin - Lymphoma -
    Adj359 MBVis
    ACH-001132 MTA - Female - - haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001134 MYLA - Unknown - not found haematopoietic_and_lymphoid_tissue - Lymphoma -
    Adj359 MBVis
    ACH-001147 OCILY12 - Male - - lymph_node - Lymphoma -
    Adj359 MBVis
    ACH-001148 OCILY132 - Female - - bone_marrow - Lymphoma -
    Adj359 MBVis
    ACH-001197 SMZ1 - Male - not found ascites - Lymphoma -
    Adj359 MBVis
    ACH-001450 BLUE1 - Male - Suspension bone_marrow Primary Lymphoma -
    Adj359 MBVis
    ACH-001498 FARAGE 1297449.0 Female - Suspension lymph_node Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-001539 KML1 - Female - Suspension pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-001616 OCILY18 - Male - Suspension pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-001617 OCILY7 1659819.0 Male - - haematopoietic_and_lymphoid_tissue Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-001636 RAMOS - Male - Suspension ascites Primary Lymphoma -
    Adj359 MBVis
    ACH-001638 RCK8 1330995.0 Male - Suspension ascites Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-001642 SCC3 910930.0 Female - Suspension pleural_effusion Primary Lymphoma DLBC
    Adj359 MBVis
    ACH-001677 U2904 - Male - Suspension pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-001685 UHO1 - Male - Suspension pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-001703 VAL 1331048.0 Female - - bone_marrow Metastasis Lymphoma DLBC
    Adj359 MBVis
    ACH-001709 WSUNHL 909785.0 Female - Suspension pleural_effusion Primary Lymphoma -
    Adj359 MBVis
    ACH-002062 SLVL - Female - Suspension haematopoietic_and_lymphoid_tissue Primary Lymphoma DLBC
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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