Myeloma cancer networks

To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

Variable description

You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

DepMap ID
Cell nameCOSMIC ID
SexRaceCultureCollection site
Type
Cancer
TCGA code
Network
ACH-000024 OPM2 909249.0 Female - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
ACH-000050 NCIH929 724825.0 Female caucasian - pleural_effusion Metastasis Myeloma MM
Adj359 MBVis
ACH-000057 OPM1 - Female - - haematopoietic_and_lymphoid_tissue - Myeloma MM
Adj359 MBVis
ACH-000167 KE97 - Male asian Adherent abdomen Metastasis Myeloma MM
Adj359 MBVis
ACH-000183 L363 924239.0 Female - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
ACH-000193 KARPAS620 1327775.0 Female - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
ACH-000204 LP1 907791.0 Female - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
ACH-000363 SKMM2 753612.0 Male - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
ACH-000380 KMS12BM 907281.0 Female - Suspension bone_marrow Primary Myeloma MM
Adj359 MBVis
ACH-000419 KMS28BM - Female asian - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
Adj359 MBVis
Showing 1 to 10 of 31 entries