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    v0.1 cell line networks
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    Myeloma cancer networks

    Data sets 1 Networks Single-sample 31

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Myeloma LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 31 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000024 OPM2 909249.0 Female - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000050 NCIH929 724825.0 Female caucasian - pleural_effusion Metastasis Myeloma MM
    Adj359 MBVis
    ACH-000057 OPM1 - Female - - haematopoietic_and_lymphoid_tissue - Myeloma MM
    Adj359 MBVis
    ACH-000167 KE97 - Male asian Adherent abdomen Metastasis Myeloma MM
    Adj359 MBVis
    ACH-000183 L363 924239.0 Female - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000193 KARPAS620 1327775.0 Female - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000204 LP1 907791.0 Female - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000363 SKMM2 753612.0 Male - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000380 KMS12BM 907281.0 Female - Suspension bone_marrow Primary Myeloma MM
    Adj359 MBVis
    ACH-000419 KMS28BM - Female asian - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000436 OCIMY7 - Unknown - Suspension haematopoietic_and_lymphoid_tissue - Myeloma -
    Adj359 MBVis
    ACH-000453 MOLP2 - Male - - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000512 INA6 - Male - not found pleural_effusion - Myeloma -
    Adj359 MBVis
    ACH-000541 KMS34 - Female asian - pleural_effusion Primary Myeloma MM
    Adj359 MBVis
    ACH-000564 KHM1B - Male - - pleural_effusion Primary Myeloma MM
    Adj359 MBVis
    ACH-000576 KMS27 - Male asian Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000588 KMS26 - Male asian Suspension pleural_effusion Primary Myeloma MM
    Adj359 MBVis
    ACH-000598 KMS21BM - Male asian - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000626 U266B1 753615.0 Male - - haematopoietic_and_lymphoid_tissue - Myeloma MM
    Adj359 MBVis
    ACH-000653 JJN3 1327766.0 Female - - bone_marrow Primary Myeloma MM
    Adj359 MBVis
    ACH-000658 KMS18 - Male - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000714 KMS11 1659817.0 Female asian Adherent pleural_effusion Primary Myeloma MM
    Adj359 MBVis
    ACH-000745 MOLP8 1330950.0 Male asian - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000763 MM1S 1659818.0 Female - Mixed adherent and suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000817 RPMI8226 905964.0 Male - Suspension haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-000821 EJM 1297447.0 Female - Suspension ascites Primary Myeloma MM
    Adj359 MBVis
    ACH-000829 HUNS1 - Male - Suspension haematopoietic_and_lymphoid_tissue - Myeloma MM
    Adj359 MBVis
    ACH-000838 AMO1 1295741.0 Female - Suspension ascites Primary Myeloma MM
    Adj359 MBVis
    ACH-000854 OCIMY5 - Unknown - not found haematopoietic_and_lymphoid_tissue - Myeloma -
    Adj359 MBVis
    ACH-000889 KMM1 - Male asian - haematopoietic_and_lymphoid_tissue Primary Myeloma MM
    Adj359 MBVis
    ACH-001541 KMS28PE - Female - - pleural_effusion Primary Myeloma -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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