To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Myeloma | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 35 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000024 | OPM2 | 909249.0 | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000050 | NCIH929 | 724825.0 | Female | caucasian | - | pleural_effusion | Metastasis | Myeloma | MM | |
| ACH-000057 | OPM1 | - | Female | - | - | haematopoietic_and_lymphoid_tissue | - | Myeloma | MM | |
| ACH-000167 | KE97 | - | Male | asian | Adherent | abdomen | Metastasis | Myeloma | MM | |
| ACH-000183 | L363 | 924239.0 | Female | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000193 | KARPAS620 | 1327775.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000204 | LP1 | 907791.0 | Female | - | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000363 | SKMM2 | 753612.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000380 | KMS12BM | 907281.0 | Female | - | Suspension | bone_marrow | Primary | Myeloma | MM | |
| ACH-000419 | KMS28BM | - | Female | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000436 | OCIMY7 | - | Unknown | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Myeloma | - | |
| ACH-000453 | MOLP2 | - | Male | - | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000512 | INA6 | - | Male | - | not found | pleural_effusion | - | Myeloma | - | |
| ACH-000541 | KMS34 | - | Female | asian | - | pleural_effusion | Primary | Myeloma | MM | |
| ACH-000564 | KHM1B | - | Male | - | - | pleural_effusion | Primary | Myeloma | MM | |
| ACH-000576 | KMS27 | - | Male | asian | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000588 | KMS26 | - | Male | asian | Suspension | pleural_effusion | Primary | Myeloma | MM | |
| ACH-000598 | KMS21BM | - | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000626 | U266B1 | 753615.0 | Male | - | - | haematopoietic_and_lymphoid_tissue | - | Myeloma | MM | |
| ACH-000653 | JJN3 | 1327766.0 | Female | - | - | bone_marrow | Primary | Myeloma | MM | |
| ACH-000658 | KMS18 | - | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000714 | KMS11 | 1659817.0 | Female | asian | Adherent | pleural_effusion | Primary | Myeloma | MM | |
| ACH-000745 | MOLP8 | 1330950.0 | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000763 | MM1S | 1659818.0 | Female | - | Mixed adherent and suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000817 | RPMI8226 | 905964.0 | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-000821 | EJM | 1297447.0 | Female | - | Suspension | ascites | Primary | Myeloma | MM | |
| ACH-000829 | HUNS1 | - | Male | - | Suspension | haematopoietic_and_lymphoid_tissue | - | Myeloma | MM | |
| ACH-000838 | AMO1 | 1295741.0 | Female | - | Suspension | ascites | Primary | Myeloma | MM | |
| ACH-000854 | OCIMY5 | - | Unknown | - | not found | haematopoietic_and_lymphoid_tissue | - | Myeloma | - | |
| ACH-000889 | KMM1 | - | Male | asian | - | haematopoietic_and_lymphoid_tissue | Primary | Myeloma | MM | |
| ACH-001541 | KMS28PE | - | Female | - | - | pleural_effusion | Primary | Myeloma | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |