To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Neuroblastoma | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 46 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000078 | MHHNB11 | 908135.0 | Male | caucasian | Adherent | autonomic_ganglia | Metastasis | Neuroblastoma | NB | |
| ACH-000099 | SIMA | 753620.0 | Male | caucasian | - | autonomic_ganglia | - | Neuroblastoma | NB | |
| ACH-000120 | CHP212 | 906820.0 | Male | - | Adherent | central_nervous_system | - | Neuroblastoma | NB | |
| ACH-000136 | CHP126 | 910567.0 | Female | - | - | autonomic_ganglia | Primary | Neuroblastoma | NB | |
| ACH-000149 | SKNSH | 717431.0 | Female | - | - | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000203 | NH6 | - | Female | - | Mixed adherent and suspension | autonomic_ganglia | Metastasis | Neuroblastoma | NB | |
| ACH-000227 | KPNYN | 907314.0 | Male | - | Mixed adherent and suspension | lymph_node | Metastasis | Neuroblastoma | NB | |
| ACH-000259 | KELLY | 753618.0 | Female | - | - | autonomic_ganglia | Primary | Neuroblastoma | NB | |
| ACH-000260 | SKNAS | 724828.0 | Female | caucasian | Adherent | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000310 | IMR32 | - | Male | caucasian | Adherent | abdomen | Metastasis | Neuroblastoma | NB | |
| ACH-000312 | SKNBE2 | - | Male | - | Mixed adherent and suspension | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000341 | SKNFI | 688087.0 | Male | caucasian | Adherent | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000345 | KPNRTBM1 | 924189.0 | Female | - | - | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000366 | SKNDZ | 688086.0 | Female | caucasian | Adherent | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-000446 | KPNSI9S | - | Male | - | Adherent | autonomic_ganglia | Metastasis | Neuroblastoma | NB | |
| ACH-000804 | NB1 | 949179.0 | Male | - | Adherent | lymph_node | Metastasis | Neuroblastoma | NB | |
| ACH-001300 | CHLA15 | - | Female | - | not found | autonomic_ganglia | - | Neuroblastoma | - | |
| ACH-001301 | COGN278 | - | Unknown | - | not found | autonomic_ganglia | - | Neuroblastoma | - | |
| ACH-001302 | COGN305 | - | Unknown | - | not found | autonomic_ganglia | - | Neuroblastoma | - | |
| ACH-001303 | NB1643 | - | Male | - | not found | abdomen | - | Neuroblastoma | - | |
| ACH-001344 | GIMEN | 906872.0 | Male | - | Adherent | bone_marrow | Metastasis | Neuroblastoma | NB | |
| ACH-001354 | LAN2 | - | Female | - | Adherent | autonomic_ganglia | Primary | Neuroblastoma | - | |
| ACH-001366 | NGP | - | Male | - | Adherent | lung | Metastasis | Neuroblastoma | - | |
| ACH-001367 | NMB | - | Unknown | - | Adherent | bone_marrow | Metastasis | Neuroblastoma | - | |
| ACH-001548 | LS | - | Female | - | Adherent | autonomic_ganglia | Metastasis | Neuroblastoma | - | |
| ACH-001603 | NH12 | 908447.0 | Male | - | - | autonomic_ganglia | Primary | Neuroblastoma | NB | |
| ACH-001674 | TGW | 910780.0 | Male | - | Adherent | autonomic_ganglia | Primary | Neuroblastoma | NB | |
| ACH-001716 | GOTO | 906875.0 | Male | - | - | autonomic_ganglia | - | Neuroblastoma | NB | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |