To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Ovarian Cancer | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 64 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000001 | NIHOVCAR3 | 905933.0 | Female | caucasian | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000013 | ONCODG1 | - | Female | caucasian | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000048 | TOV112D | 1299070.0 | Female | caucasian | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000091 | OV56 | 1480362.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000103 | CAOV4 | 949090.0 | Female | caucasian | - | ovary | Metastasis | Ovarian Cancer | OV | |
| ACH-000116 | OAW28 | 946360.0 | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000123 | COV434 | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000132 | JHOS2 | 1479995.0 | Female | asian | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000237 | JHOM1 | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000256 | COV318 | - | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000278 | COV362 | - | Female | - | Adherent | pleural_effusion | Metastasis | Ovarian Cancer | OV | |
| ACH-000280 | SNU840 | - | Female | asian | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000291 | OV90 | 1240197.0 | Female | caucasian | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000308 | EFO21 | 911905.0 | Female | caucasian | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000324 | JHOC5 | - | Female | - | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000333 | JHOM2B | - | Female | - | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000409 | OVSAHO | - | Female | asian | - | abdomen | Metastasis | Ovarian Cancer | OV | |
| ACH-000430 | TYKNU | 909774.0 | Female | asian | - | ovary | Primary | Ovarian Cancer | UNABLE TO CLASSIFY | |
| ACH-000443 | OVKATE | 1240199.0 | Female | asian | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000460 | SNU8 | - | Female | asian | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000520 | 59M | - | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000524 | KURAMOCHI | 909975.0 | Female | asian | - | ascites | Metastasis | Ovarian Cancer | UNABLE TO CLASSIFY | |
| ACH-000527 | OVISE | 1240198.0 | Female | asian | - | bone | Metastasis | Ovarian Cancer | OV | |
| ACH-000542 | HEYA8 | - | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000574 | FUOV1 | 1240129.0 | Female | asian | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000584 | JHOS4 | 1480359.0 | Female | asian | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000608 | COV644 | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000617 | OVCAR4 | 905990.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000635 | SNU119 | - | Female | asian | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000646 | OVMANA | - | Female | asian | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000657 | A2780 | 906804.0 | Female | - | Suspension | ovary | Primary | Ovarian Cancer | UNABLE TO CLASSIFY | |
| ACH-000663 | OVTOKO | 1298365.0 | Female | asian | Adherent | spleen | Metastasis | Ovarian Cancer | OV | |
| ACH-000688 | OV7 | 1480360.0 | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000696 | OVCAR8 | 905991.0 | Female | - | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000701 | RMUGS | - | Female | - | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000704 | OAW42 | 910548.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000713 | CAOV3 | 906825.0 | Female | caucasian | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000719 | RMGI | 909699.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000796 | MCAS | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000811 | SKOV3 | 905959.0 | Female | caucasian | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000885 | TOV21G | 1240222.0 | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000906 | ES2 | 1240128.0 | Female | african_american | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-000936 | EFO27 | 906852.0 | Female | - | Adherent | abdomen | Metastasis | Ovarian Cancer | OV | |
| ACH-000947 | OVK18 | 1480371.0 | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000962 | OC314 | 909257.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-000966 | IGROV1 | 905968.0 | Female | - | - | ovary | Primary | Ovarian Cancer | OV | |
| ACH-001048 | COV504 | - | Female | - | Adherent | pleural_effusion | Metastasis | Ovarian Cancer | OV | |
| ACH-001145 | OC316 | - | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-001151 | OVCAR5 | 905969.0 | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-001278 | BIN67 | - | Female | - | not found | bone | Metastasis | Ovarian Cancer | - | |
| ACH-001279 | SCCOHT1 | - | Unknown | - | not found | ovary | - | Ovarian Cancer | - | |
| ACH-001340 | COV413A | - | Female | - | Adherent | large_intestine | Metastasis | Ovarian Cancer | - | |
| ACH-001369 | OCIC5X | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | - | |
| ACH-001370 | OCIP5X | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | - | |
| ACH-001373 | OV17R | 1480361.0 | Female | - | - | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-001374 | PA1 | 909255.0 | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-001403 | TO14 | - | Female | - | Adherent | abdomen | Metastasis | Ovarian Cancer | - | |
| ACH-001418 | UWB1289 | 1480374.0 | Female | - | Adherent | ovary | Primary | Ovarian Cancer | OV | |
| ACH-001628 | PEA1 | - | Female | - | Adherent | pleural_effusion | Metastasis | Ovarian Cancer | - | |
| ACH-001630 | PEO1 | 1480372.0 | Female | - | Adherent | ascites | Metastasis | Ovarian Cancer | OV | |
| ACH-001632 | PEO4 | - | Female | - | - | ascites | Metastasis | Ovarian Cancer | - | |
| ACH-001719 | OCIC4P | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | - | |
| ACH-001991 | NZOV9 | - | Female | - | Adherent and floating viable cells | ovary | Primary | Ovarian Cancer | - | |
| ACH-002038 | HSKTC | - | Female | - | Adherent | ovary | Primary | Ovarian Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |