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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Ovarian cancer networks

    Data sets 1 Networks Single-sample 64

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Ovarian Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 64 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000001 NIHOVCAR3 905933.0 Female caucasian - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000013 ONCODG1 - Female caucasian - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000048 TOV112D 1299070.0 Female caucasian Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000091 OV56 1480362.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000103 CAOV4 949090.0 Female caucasian - ovary Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000116 OAW28 946360.0 Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000123 COV434 - Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000132 JHOS2 1479995.0 Female asian - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000237 JHOM1 - Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000256 COV318 - Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000278 COV362 - Female - Adherent pleural_effusion Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000280 SNU840 - Female asian Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000291 OV90 1240197.0 Female caucasian Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000308 EFO21 911905.0 Female caucasian Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000324 JHOC5 - Female - - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000333 JHOM2B - Female - - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000409 OVSAHO - Female asian - abdomen Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000430 TYKNU 909774.0 Female asian - ovary Primary Ovarian Cancer UNABLE TO CLASSIFY
    Adj359 MBVis
    ACH-000443 OVKATE 1240199.0 Female asian - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000460 SNU8 - Female asian Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000520 59M - Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000524 KURAMOCHI 909975.0 Female asian - ascites Metastasis Ovarian Cancer UNABLE TO CLASSIFY
    Adj359 MBVis
    ACH-000527 OVISE 1240198.0 Female asian - bone Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000542 HEYA8 - Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000574 FUOV1 1240129.0 Female asian - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000584 JHOS4 1480359.0 Female asian - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000608 COV644 - Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000617 OVCAR4 905990.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000635 SNU119 - Female asian - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000646 OVMANA - Female asian - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000657 A2780 906804.0 Female - Suspension ovary Primary Ovarian Cancer UNABLE TO CLASSIFY
    Adj359 MBVis
    ACH-000663 OVTOKO 1298365.0 Female asian Adherent spleen Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000688 OV7 1480360.0 Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000696 OVCAR8 905991.0 Female - - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000701 RMUGS - Female - - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000704 OAW42 910548.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000713 CAOV3 906825.0 Female caucasian Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000719 RMGI 909699.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000796 MCAS - Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000811 SKOV3 905959.0 Female caucasian Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000885 TOV21G 1240222.0 Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000906 ES2 1240128.0 Female african_american Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-000936 EFO27 906852.0 Female - Adherent abdomen Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000947 OVK18 1480371.0 Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000962 OC314 909257.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-000966 IGROV1 905968.0 Female - - ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-001048 COV504 - Female - Adherent pleural_effusion Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001145 OC316 - Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001151 OVCAR5 905969.0 Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001278 BIN67 - Female - not found bone Metastasis Ovarian Cancer -
    Adj359 MBVis
    ACH-001279 SCCOHT1 - Unknown - not found ovary - Ovarian Cancer -
    Adj359 MBVis
    ACH-001340 COV413A - Female - Adherent large_intestine Metastasis Ovarian Cancer -
    Adj359 MBVis
    ACH-001369 OCIC5X - Female - Adherent ovary Primary Ovarian Cancer -
    Adj359 MBVis
    ACH-001370 OCIP5X - Female - Adherent ovary Primary Ovarian Cancer -
    Adj359 MBVis
    ACH-001373 OV17R 1480361.0 Female - - ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001374 PA1 909255.0 Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001403 TO14 - Female - Adherent abdomen Metastasis Ovarian Cancer -
    Adj359 MBVis
    ACH-001418 UWB1289 1480374.0 Female - Adherent ovary Primary Ovarian Cancer OV
    Adj359 MBVis
    ACH-001628 PEA1 - Female - Adherent pleural_effusion Metastasis Ovarian Cancer -
    Adj359 MBVis
    ACH-001630 PEO1 1480372.0 Female - Adherent ascites Metastasis Ovarian Cancer OV
    Adj359 MBVis
    ACH-001632 PEO4 - Female - - ascites Metastasis Ovarian Cancer -
    Adj359 MBVis
    ACH-001719 OCIC4P - Female - Adherent ovary Primary Ovarian Cancer -
    Adj359 MBVis
    ACH-001991 NZOV9 - Female - Adherent and floating viable cells ovary Primary Ovarian Cancer -
    Adj359 MBVis
    ACH-002038 HSKTC - Female - Adherent ovary Primary Ovarian Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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