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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Pancreatic cancer networks

    Data sets 1 Networks Single-sample 52

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Pancreatic Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 52 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000022 PATU8988S - Female - Adherent liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000023 PATU8988T 1240201.0 Female - - liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000031 PANC0213 - Female caucasian - pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000042 PANC0203 1298475.0 Female caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000060 PANC1005 925348.0 Male caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000085 T3M4 - Male asian Adherent lymph_node Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000093 PANC0504 - Female caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000094 HPAFII 724869.0 Male caucasian - ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000107 CAPAN2 910915.0 Male caucasian - pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000108 KP3 1298219.0 Male asian - liver Metastasis Pancreatic Cancer UNABLE TO CLASSIFY
    Adj359 MBVis
    ACH-000114 SU8686 1240218.0 Female caucasian - liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000118 HUPT3 907285.0 Male asian Adherent ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000138 CFPAC1 906821.0 Male caucasian Mixed adherent and suspension liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000139 PANC0327 925346.0 Female caucasian - pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000155 SW1990 910907.0 Male caucasian - spleen Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000164 PANC1 - Male caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000178 HS766T 1298141.0 Male caucasian Adherent lymph_node Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000205 PK59 - Female - - liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000213 HUPT4 907286.0 Male asian - ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000222 ASPC1 910702.0 Female caucasian Adherent ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000235 PANC0403 1298476.0 Male caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000243 DANG 1290797.0 Female - Adherent pancreas - Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000265 KP4 753572.0 Male asian Adherent ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000266 SNU213 - Male asian - pancreas - Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000270 HPAC 1298136.0 Female caucasian - pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000281 KP2 1298218.0 Female asian - pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000307 PK1 - Male - Adherent liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000320 PSN1 910546.0 Male - Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000332 YAPC 909904.0 Male asian Adherent ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000347 QGP1 1298534.0 Male asian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000354 CAPAN1 753624.0 Male caucasian - liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000417 PANC0813 925347.0 Male caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000468 PK45H - Unknown - Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000502 TCCPAN2 - Female asian Adherent ascites Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000517 SNU410 - Male asian - liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000535 BXPC3 906693.0 Female - Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000599 PATU8902 1298526.0 Female - Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000601 MIAPACA2 724870.0 Male caucasian Adherent pancreas Primary Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000652 SUIT2 1240219.0 Male asian Adherent liver Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000685 L33 - Female - Adherent lymph_node Metastasis Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-000933 SNU324 - Male asian - pancreas - Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-001098 KCIMOH1 - Female caucasian Adherent pancreas - Pancreatic Cancer PAAD
    Adj359 MBVis
    ACH-001353 JOPACA1 - Male - Adherent pancreas Primary Pancreatic Cancer -
    Adj359 MBVis
    ACH-001375 PACADD119 - Male - Adherent pancreas Primary Pancreatic Cancer -
    Adj359 MBVis
    ACH-001376 PACADD135 - Female - Adherent lymph_node Metastasis Pancreatic Cancer -
    Adj359 MBVis
    ACH-001377 PACADD137 - Female - Adherent pancreas Primary Pancreatic Cancer -
    Adj359 MBVis
    ACH-001378 PACADD159 - Male - Adherent pancreas Primary Pancreatic Cancer -
    Adj359 MBVis
    ACH-001379 PACADD161 - Female - Adherent liver Metastasis Pancreatic Cancer -
    Adj359 MBVis
    ACH-001380 PACADD165 - Male - Adherent ascites Metastasis Pancreatic Cancer -
    Adj359 MBVis
    ACH-001382 PACADD188 - Female - Adherent pancreas Metastasis Pancreatic Cancer -
    Adj359 MBVis
    ACH-001999 9505BIK - Unknown - Adherent pancreas - Pancreatic Cancer -
    Adj359 MBVis
    ACH-002039 PK8 - Unknown - Adherent liver Metastasis Pancreatic Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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