To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Pancreatic Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 52 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000022 | PATU8988S | - | Female | - | Adherent | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000023 | PATU8988T | 1240201.0 | Female | - | - | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000031 | PANC0213 | - | Female | caucasian | - | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000042 | PANC0203 | 1298475.0 | Female | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000060 | PANC1005 | 925348.0 | Male | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000085 | T3M4 | - | Male | asian | Adherent | lymph_node | Primary | Pancreatic Cancer | PAAD | |
| ACH-000093 | PANC0504 | - | Female | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000094 | HPAFII | 724869.0 | Male | caucasian | - | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000107 | CAPAN2 | 910915.0 | Male | caucasian | - | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000108 | KP3 | 1298219.0 | Male | asian | - | liver | Metastasis | Pancreatic Cancer | UNABLE TO CLASSIFY | |
| ACH-000114 | SU8686 | 1240218.0 | Female | caucasian | - | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000118 | HUPT3 | 907285.0 | Male | asian | Adherent | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000138 | CFPAC1 | 906821.0 | Male | caucasian | Mixed adherent and suspension | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000139 | PANC0327 | 925346.0 | Female | caucasian | - | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000155 | SW1990 | 910907.0 | Male | caucasian | - | spleen | Primary | Pancreatic Cancer | PAAD | |
| ACH-000164 | PANC1 | - | Male | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000178 | HS766T | 1298141.0 | Male | caucasian | Adherent | lymph_node | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000205 | PK59 | - | Female | - | - | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000213 | HUPT4 | 907286.0 | Male | asian | - | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000222 | ASPC1 | 910702.0 | Female | caucasian | Adherent | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000235 | PANC0403 | 1298476.0 | Male | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000243 | DANG | 1290797.0 | Female | - | Adherent | pancreas | - | Pancreatic Cancer | PAAD | |
| ACH-000265 | KP4 | 753572.0 | Male | asian | Adherent | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000266 | SNU213 | - | Male | asian | - | pancreas | - | Pancreatic Cancer | PAAD | |
| ACH-000270 | HPAC | 1298136.0 | Female | caucasian | - | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000281 | KP2 | 1298218.0 | Female | asian | - | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000307 | PK1 | - | Male | - | Adherent | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000320 | PSN1 | 910546.0 | Male | - | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000332 | YAPC | 909904.0 | Male | asian | Adherent | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000347 | QGP1 | 1298534.0 | Male | asian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000354 | CAPAN1 | 753624.0 | Male | caucasian | - | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000417 | PANC0813 | 925347.0 | Male | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000468 | PK45H | - | Unknown | - | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000502 | TCCPAN2 | - | Female | asian | Adherent | ascites | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000517 | SNU410 | - | Male | asian | - | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000535 | BXPC3 | 906693.0 | Female | - | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000599 | PATU8902 | 1298526.0 | Female | - | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000601 | MIAPACA2 | 724870.0 | Male | caucasian | Adherent | pancreas | Primary | Pancreatic Cancer | PAAD | |
| ACH-000652 | SUIT2 | 1240219.0 | Male | asian | Adherent | liver | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000685 | L33 | - | Female | - | Adherent | lymph_node | Metastasis | Pancreatic Cancer | PAAD | |
| ACH-000933 | SNU324 | - | Male | asian | - | pancreas | - | Pancreatic Cancer | PAAD | |
| ACH-001098 | KCIMOH1 | - | Female | caucasian | Adherent | pancreas | - | Pancreatic Cancer | PAAD | |
| ACH-001353 | JOPACA1 | - | Male | - | Adherent | pancreas | Primary | Pancreatic Cancer | - | |
| ACH-001375 | PACADD119 | - | Male | - | Adherent | pancreas | Primary | Pancreatic Cancer | - | |
| ACH-001376 | PACADD135 | - | Female | - | Adherent | lymph_node | Metastasis | Pancreatic Cancer | - | |
| ACH-001377 | PACADD137 | - | Female | - | Adherent | pancreas | Primary | Pancreatic Cancer | - | |
| ACH-001378 | PACADD159 | - | Male | - | Adherent | pancreas | Primary | Pancreatic Cancer | - | |
| ACH-001379 | PACADD161 | - | Female | - | Adherent | liver | Metastasis | Pancreatic Cancer | - | |
| ACH-001380 | PACADD165 | - | Male | - | Adherent | ascites | Metastasis | Pancreatic Cancer | - | |
| ACH-001382 | PACADD188 | - | Female | - | Adherent | pancreas | Metastasis | Pancreatic Cancer | - | |
| ACH-001999 | 9505BIK | - | Unknown | - | Adherent | pancreas | - | Pancreatic Cancer | - | |
| ACH-002039 | PK8 | - | Unknown | - | Adherent | liver | Metastasis | Pancreatic Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |