To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Rhabdoid | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 20 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000096 | G401 | 907299.0 | Male | caucasian | Adherent | kidney | Primary | Rhabdoid | SARC | |
| ACH-000160 | BT12 | - | Female | - | Adherent | soft_tissue | - | Rhabdoid | - | |
| ACH-000172 | TM87 | - | Unknown | - | not found | pleural_effusion | Metastasis | Rhabdoid | - | |
| ACH-000201 | A204 | 910784.0 | Female | - | - | soft_tissue | Primary | Rhabdoid | SARC | |
| ACH-000533 | NCIH2004RT | - | Unknown | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-000597 | TTC709 | - | Unknown | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-000607 | KYM1 | 1240166.0 | Male | asian | Mixed adherent and suspension | soft_tissue | Primary | Rhabdoid | SARC | |
| ACH-001020 | BT16 | - | Male | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-001028 | CHLA06ATRT | - | Female | - | not found | central_nervous_system | - | Rhabdoid | - | |
| ACH-001031 | CHLA266 | - | Female | - | Adherent | soft_tissue | - | Rhabdoid | - | |
| ACH-001059 | DL | - | Unknown | - | - | soft_tissue | - | Rhabdoid | - | |
| ACH-001099 | KD | - | Unknown | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-001109 | KPMRTRY | - | Male | - | - | soft_tissue | - | Rhabdoid | - | |
| ACH-001128 | MON | - | Male | - | - | soft_tissue | - | Rhabdoid | - | |
| ACH-001200 | STM9101 | - | Male | - | - | lung | Metastasis | Rhabdoid | - | |
| ACH-001210 | TTC1240 | - | Female | - | - | central_nervous_system | Metastasis | Rhabdoid | - | |
| ACH-001211 | TTC549 | - | Female | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-001212 | TTC642 | - | Female | - | not found | soft_tissue | - | Rhabdoid | - | |
| ACH-001289 | COGAR359 | - | Male | - | Suspension | central_nervous_system | - | Rhabdoid | - | |
| ACH-001532 | JMURTK2 | - | Female | - | Adherent | central_nervous_system | Metastasis | Rhabdoid | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |