To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expression |
Regulator |
nReg |
Genes | Data | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Sarcoma | LIONESS | netZooM 0.5.3 | TF | 1132 | 18560 | CCLE | 36 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000037 | S117 | - | Female | - | - | soft_tissue | - | Sarcoma | SARC | |
| ACH-000051 | TE617T | - | Female | caucasian | - | soft_tissue | Primary | Sarcoma | SARC | |
| ACH-000054 | HT1080 | 907064.0 | Male | caucasian | Adherent | soft_tissue | Metastasis | Sarcoma | SARC | |
| ACH-000100 | RH41 | 1240210.0 | Female | - | Adherent | liver | Metastasis | Sarcoma | SARC | |
| ACH-000145 | SKLMS1 | 909720.0 | Female | caucasian | - | soft_tissue | Primary | Sarcoma | - | |
| ACH-000169 | RD | 909264.0 | Female | caucasian | Adherent | soft_tissue | Primary | Sarcoma | SARC | |
| ACH-000449 | MESSA | 908127.0 | Female | caucasian | - | endometrium | Primary | Sarcoma | SARC | |
| ACH-000505 | RKN | 1298539.0 | Female | asian | - | ovary | Primary | Sarcoma | SARC | |
| ACH-000689 | RH18 | 971774.0 | Female | - | - | soft_tissue | - | Sarcoma | SARC | |
| ACH-000772 | TE441T | 924248.0 | Female | african_american | - | soft_tissue | - | Sarcoma | SARC | |
| ACH-000833 | RH30 | - | Male | caucasian | Adherent | bone_marrow | Metastasis | Sarcoma | SARC | |
| ACH-000835 | GCT | 906999.0 | Male | - | Adherent | soft_tissue | Metastasis | Sarcoma | SARC | |
| ACH-000939 | SKUT1 | 909732.0 | Female | caucasian | Adherent | endometrium | Primary | Sarcoma | SARC | |
| ACH-001050 | CW9019 | - | Unknown | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-001096 | JR | - | Unknown | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-001164 | CCLFPEDS0003T | - | Unknown | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001184 | SCMCRM2 | - | Female | - | Adherent | bone_marrow | Metastasis | Sarcoma | - | |
| ACH-001196 | SMSCTR | - | Male | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-001270 | 127399 | - | Unknown | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001274 | SW982 | 909759.0 | Female | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001275 | SYO1 | - | Female | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001277 | YAMATO | - | Unknown | - | not found | soft_tissue | Metastasis | Sarcoma | - | |
| ACH-001280 | SCS214 | - | Unknown | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001322 | CME1 | - | Unknown | - | not found | soft_tissue | - | Sarcoma | - | |
| ACH-001433 | CCLFPEDS0008T | - | Unknown | - | Adherent | soft_tissue | Metastasis | Sarcoma | - | |
| ACH-001702 | VAESBJ | 688121.0 | Male | - | Adherent | bone_marrow | Metastasis | Sarcoma | - | |
| ACH-001740 | RH28 | - | Male | - | Adherent | lymph_node | Metastasis | Sarcoma | - | |
| ACH-001741 | RMS13 | - | Unknown | - | - | soft_tissue | - | Sarcoma | - | |
| ACH-001743 | RC2 | - | Unknown | - | - | soft_tissue | Metastasis | Sarcoma | - | |
| ACH-001745 | RHJT | - | Unknown | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-001750 | TTC442 | - | Male | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-001751 | RH36 | - | Male | - | - | soft_tissue | - | Sarcoma | - | |
| ACH-001765 | RH4 | - | Female | - | Adherent | liver | Metastasis | Sarcoma | - | |
| ACH-001790 | RH18DM | - | Unknown | - | Adherent | soft_tissue | - | Sarcoma | - | |
| ACH-002065 | HSPSS | - | Male | - | Adherent | prostate | Metastasis | Sarcoma | - | |
| ACH-002066 | HSSCH2 | - | Female | - | - | central_nervous_system | Primary | Sarcoma | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |