Home
  • Networks
    • Small molecules

    • Cancer

    • Tissues

    • Cell lines
  • Analysis
    • Drug repurposing (CLUEreg)
    • Enrichment analysis
    • Upload your network
    • Network comparison
    • CCLE map
  • Help
    • GitHub
    • API
    • Changelog
    • Download
    • Contact
  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Sarcoma cancer networks

    Data sets 1 Networks Single-sample 36

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Sarcoma LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 36 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000037 S117 - Female - - soft_tissue - Sarcoma SARC
    Adj359 MBVis
    ACH-000051 TE617T - Female caucasian - soft_tissue Primary Sarcoma SARC
    Adj359 MBVis
    ACH-000054 HT1080 907064.0 Male caucasian Adherent soft_tissue Metastasis Sarcoma SARC
    Adj359 MBVis
    ACH-000100 RH41 1240210.0 Female - Adherent liver Metastasis Sarcoma SARC
    Adj359 MBVis
    ACH-000145 SKLMS1 909720.0 Female caucasian - soft_tissue Primary Sarcoma -
    Adj359 MBVis
    ACH-000169 RD 909264.0 Female caucasian Adherent soft_tissue Primary Sarcoma SARC
    Adj359 MBVis
    ACH-000449 MESSA 908127.0 Female caucasian - endometrium Primary Sarcoma SARC
    Adj359 MBVis
    ACH-000505 RKN 1298539.0 Female asian - ovary Primary Sarcoma SARC
    Adj359 MBVis
    ACH-000689 RH18 971774.0 Female - - soft_tissue - Sarcoma SARC
    Adj359 MBVis
    ACH-000772 TE441T 924248.0 Female african_american - soft_tissue - Sarcoma SARC
    Adj359 MBVis
    ACH-000833 RH30 - Male caucasian Adherent bone_marrow Metastasis Sarcoma SARC
    Adj359 MBVis
    ACH-000835 GCT 906999.0 Male - Adherent soft_tissue Metastasis Sarcoma SARC
    Adj359 MBVis
    ACH-000939 SKUT1 909732.0 Female caucasian Adherent endometrium Primary Sarcoma SARC
    Adj359 MBVis
    ACH-001050 CW9019 - Unknown - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001096 JR - Unknown - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001164 CCLFPEDS0003T - Unknown - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001184 SCMCRM2 - Female - Adherent bone_marrow Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001196 SMSCTR - Male - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001270 127399 - Unknown - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001274 SW982 909759.0 Female - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001275 SYO1 - Female - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001277 YAMATO - Unknown - not found soft_tissue Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001280 SCS214 - Unknown - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001322 CME1 - Unknown - not found soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001433 CCLFPEDS0008T - Unknown - Adherent soft_tissue Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001702 VAESBJ 688121.0 Male - Adherent bone_marrow Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001740 RH28 - Male - Adherent lymph_node Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001741 RMS13 - Unknown - - soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001743 RC2 - Unknown - - soft_tissue Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001745 RHJT - Unknown - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001750 TTC442 - Male - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001751 RH36 - Male - - soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-001765 RH4 - Female - Adherent liver Metastasis Sarcoma -
    Adj359 MBVis
    ACH-001790 RH18DM - Unknown - Adherent soft_tissue - Sarcoma -
    Adj359 MBVis
    ACH-002065 HSPSS - Male - Adherent prostate Metastasis Sarcoma -
    Adj359 MBVis
    ACH-002066 HSSCH2 - Female - - central_nervous_system Primary Sarcoma -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

    License
    Share