Home
  • Networks
    • Small molecules

    • Cancer

    • Tissues

    • Cell lines
  • Analysis
    • Drug repurposing (CLUEreg)
    • Enrichment analysis
    • Upload your network
    • Network comparison
    • CCLE map
  • Help
    • GitHub
    • API
    • Changelog
    • Download
    • Contact
  • Changelog
    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks
    v1.6.0 BONOBO networks
    v1.7.0 tcga-data-nf networks

    Skin cancer networks

    Data sets 1 Networks Single-sample 80

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (2023) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Skin Cancer LIONESS netZooM 0.5.3
    AdjCodeVis
    TF 1132 18560 CCLE 80 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000008 A101D 910921.0 Male caucasian - skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000014 HS294T - Male caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000219 A375 906793.0 Female - Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000274 HS852T - Male - - skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000304 WM115 909784.0 Female - Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000322 HT144 907067.0 Male caucasian Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000348 RPMI7951 910903.0 Female caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000401 COLO800 906813.0 Male - - skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000404 K029AX - Unknown - - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000423 SKMEL3 909724.0 Female caucasian - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000425 UACC62 905976.0 Unknown - - skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000441 SH4 909713.0 Female caucasian Mixed adherent and suspension pleural_effusion Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000450 MELHO 908124.0 Female - Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000458 CJM - Unknown - - skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000465 SKMEL1 909723.0 Male caucasian - haematopoietic_and_lymphoid_tissue Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000477 MALME3M - Male caucasian Mixed adherent and suspension lung Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000550 IGR39 - Male - Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000572 G361 906865.0 Male caucasian - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000579 UACC257 905977.0 Unknown - - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000580 C32 906830.0 Male caucasian Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000582 COLO741 - Female - - skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000614 RVH421 909706.0 Male caucasian Adherent central_nervous_system Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000615 SKMEL28 905954.0 Male - - skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000632 HS944T - Male caucasian Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000640 SKMEL31 909727.0 Female - - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000644 COLO829 687448.0 Male caucasian - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000650 IGR37 1240153.0 Male - - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000661 WM1799 - Male - Adherent skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000730 SKMEL5 905956.0 Female caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000750 LOXIMVI 905974.0 Male - - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000765 WM983B - Male - - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000788 A2058 906792.0 Male caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000799 HS695T - Male caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000801 HS936T - Male - Adherent skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000805 COLO679 906818.0 Female - Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000810 SKMEL30 909726.0 Male caucasian Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000812 COLO783 1240125.0 Female - - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000814 HS939T 1298144.0 Female caucasian Adherent skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000822 SKMEL24 909725.0 Male caucasian Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000827 WM793 1299081.0 Male - Adherent skin - Skin Cancer SKCM
    Adj359 MBVis
    ACH-000881 MELJUSO 908125.0 Female - Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000882 IGR1 907169.0 Male - Adherent lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000884 MDAMB435S - Unknown caucasian - skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000899 WM88 - Male - Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000915 IPC298 907171.0 Female - Adherent skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000931 HMCB - Female - - skin Primary Skin Cancer SKCM
    Adj359 MBVis
    ACH-000968 COLO792 906814.0 Male - Adherent central_nervous_system Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-000987 MEWO 908128.0 Male caucasian - lymph_node Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-001190 SKMEL2 905955.0 Male caucasian Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-001239 WM2664 - Female - Adherent skin Metastasis Skin Cancer SKCM
    Adj359 MBVis
    ACH-001328 A431 910925.0 Female - Adherent skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001339 COLO794 - Male - - skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001442 A388 910697.0 Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001521 HKA1 - Female - Adherent skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001522 HMY1 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001523 HSC1 - Male - Adherent skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001524 HSC5 - Male - Adherent skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001550 MCC13 - Female - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001551 MCC142 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001552 MCC26 - Female - Adherent skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-001563 MM127 - Male - Adherent skin Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001566 MM370 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001567 MM383 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001568 MM386 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001569 MM415 - Male - - lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001570 MM426 - Male - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-001645 SEKI - Female - Suspension skin Primary Skin Cancer -
    Adj359 MBVis
    ACH-002001 A375SKINCJ1 - Unknown - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002002 A375SKINCJ2 - Unknown - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002003 A375SKINCJ3 - Unknown - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002004 UACC62SKINCJ1 - Unknown - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002005 SKMEL19 - Male - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002458 HT144SKINFV1 - Male - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002459 HT144SKINFV3 - Male - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002460 HT144SKINFV2 - Male - Adherent skin - Skin Cancer -
    Adj359 MBVis
    ACH-002461 RVH421SKINFV1 - Male - Adherent central_nervous_system - Skin Cancer -
    Adj359 MBVis
    ACH-002508 WM3211 - Female - Adherent lymph_node Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-002509 WM4235 - Unknown - - skin Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-002510 M040416 - Male - Adherent skin Metastasis Skin Cancer -
    Adj359 MBVis
    ACH-002511 M140325 - Female - - skin Primary Skin Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

    License
    Share