To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Skin Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 114 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000008 | A101D | 910921.0 | Male | caucasian | - | skin | - | Skin Cancer | SKCM | |
| ACH-000014 | HS294T | - | Male | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000219 | A375 | 906793.0 | Female | - | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000274 | HS852T | - | Male | - | - | skin | - | Skin Cancer | SKCM | |
| ACH-000304 | WM115 | 909784.0 | Female | - | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000322 | HT144 | 907067.0 | Male | caucasian | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000348 | RPMI7951 | 910903.0 | Female | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000401 | COLO800 | 906813.0 | Male | - | - | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000404 | K029AX | - | Unknown | - | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000423 | SKMEL3 | 909724.0 | Female | caucasian | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000425 | UACC62 | 905976.0 | Unknown | - | - | skin | - | Skin Cancer | SKCM | |
| ACH-000441 | SH4 | 909713.0 | Female | caucasian | Mixed adherent and suspension | pleural_effusion | Metastasis | Skin Cancer | SKCM | |
| ACH-000450 | MELHO | 908124.0 | Female | - | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000458 | CJM | - | Unknown | - | - | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000465 | SKMEL1 | 909723.0 | Male | caucasian | - | haematopoietic_and_lymphoid_tissue | Metastasis | Skin Cancer | SKCM | |
| ACH-000477 | MALME3M | - | Male | caucasian | Mixed adherent and suspension | lung | Metastasis | Skin Cancer | SKCM | |
| ACH-000550 | IGR39 | - | Male | - | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000572 | G361 | 906865.0 | Male | caucasian | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000579 | UACC257 | 905977.0 | Unknown | - | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000580 | C32 | 906830.0 | Male | caucasian | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000582 | COLO741 | - | Female | - | - | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000614 | RVH421 | 909706.0 | Male | caucasian | Adherent | central_nervous_system | Metastasis | Skin Cancer | SKCM | |
| ACH-000615 | SKMEL28 | 905954.0 | Male | - | - | skin | - | Skin Cancer | SKCM | |
| ACH-000632 | HS944T | - | Male | caucasian | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000640 | SKMEL31 | 909727.0 | Female | - | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000644 | COLO829 | 687448.0 | Male | caucasian | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000650 | IGR37 | 1240153.0 | Male | - | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000661 | WM1799 | - | Male | - | Adherent | skin | - | Skin Cancer | SKCM | |
| ACH-000730 | SKMEL5 | 905956.0 | Female | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000750 | LOXIMVI | 905974.0 | Male | - | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000765 | WM983B | - | Male | - | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000788 | A2058 | 906792.0 | Male | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000799 | HS695T | - | Male | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000801 | HS936T | - | Male | - | Adherent | skin | - | Skin Cancer | SKCM | |
| ACH-000805 | COLO679 | 906818.0 | Female | - | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000810 | SKMEL30 | 909726.0 | Male | caucasian | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000812 | COLO783 | 1240125.0 | Female | - | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000814 | HS939T | 1298144.0 | Female | caucasian | Adherent | skin | - | Skin Cancer | SKCM | |
| ACH-000822 | SKMEL24 | 909725.0 | Male | caucasian | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000827 | WM793 | 1299081.0 | Male | - | Adherent | skin | - | Skin Cancer | SKCM | |
| ACH-000881 | MELJUSO | 908125.0 | Female | - | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000882 | IGR1 | 907169.0 | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-000884 | MDAMB435S | - | Unknown | caucasian | - | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000899 | WM88 | - | Male | - | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-000915 | IPC298 | 907171.0 | Female | - | Adherent | skin | Primary | Skin Cancer | SKCM | |
| ACH-000931 | HMCB | - | Female | - | - | skin | Primary | Skin Cancer | SKCM | |
| ACH-000968 | COLO792 | 906814.0 | Male | - | Adherent | central_nervous_system | Metastasis | Skin Cancer | SKCM | |
| ACH-000987 | MEWO | 908128.0 | Male | caucasian | - | lymph_node | Metastasis | Skin Cancer | SKCM | |
| ACH-001190 | SKMEL2 | 905955.0 | Male | caucasian | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-001239 | WM2664 | - | Female | - | Adherent | skin | Metastasis | Skin Cancer | SKCM | |
| ACH-001328 | A431 | 910925.0 | Female | - | Adherent | skin | Primary | Skin Cancer | - | |
| ACH-001339 | COLO794 | - | Male | - | - | skin | Primary | Skin Cancer | - | |
| ACH-001442 | A388 | 910697.0 | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001521 | HKA1 | - | Female | - | Adherent | skin | Primary | Skin Cancer | - | |
| ACH-001522 | HMY1 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001523 | HSC1 | - | Male | - | Adherent | skin | Primary | Skin Cancer | - | |
| ACH-001524 | HSC5 | - | Male | - | Adherent | skin | Primary | Skin Cancer | - | |
| ACH-001550 | MCC13 | - | Female | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001551 | MCC142 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001552 | MCC26 | - | Female | - | Adherent | skin | Primary | Skin Cancer | - | |
| ACH-001563 | MM127 | - | Male | - | Adherent | skin | Metastasis | Skin Cancer | - | |
| ACH-001566 | MM370 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001567 | MM383 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001568 | MM386 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001569 | MM415 | - | Male | - | - | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001570 | MM426 | - | Male | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-001645 | SEKI | - | Female | - | Suspension | skin | Primary | Skin Cancer | - | |
| ACH-002001 | A375SKINCJ1 | - | Unknown | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002002 | A375SKINCJ2 | - | Unknown | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002003 | A375SKINCJ3 | - | Unknown | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002004 | UACC62SKINCJ1 | - | Unknown | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002005 | SKMEL19 | - | Male | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002458 | HT144SKINFV1 | - | Male | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002459 | HT144SKINFV3 | - | Male | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002460 | HT144SKINFV2 | - | Male | - | Adherent | skin | - | Skin Cancer | - | |
| ACH-002461 | RVH421SKINFV1 | - | Male | - | Adherent | central_nervous_system | - | Skin Cancer | - | |
| ACH-002508 | WM3211 | - | Female | - | Adherent | lymph_node | Metastasis | Skin Cancer | - | |
| ACH-002509 | WM4235 | - | Unknown | - | - | skin | Metastasis | Skin Cancer | - | |
| ACH-002510 | M040416 | - | Male | - | Adherent | skin | Metastasis | Skin Cancer | - | |
| ACH-002511 | M140325 | - | Female | - | - | skin | Primary | Skin Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |