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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks

    Thyroid cancer networks

    Data sets 1 Networks Single-sample 17

    To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

    Publication
    The reference for this network is Ben Guebila et al. (in preparation) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Motif Expression
    Regulator
    nReg
    Genes Data Samples Precision
    Reference
    1 Thyroid Cancer LIONESS netZooPy 0.8
    AdjCodeVis
    TF 1132 18560 CCLE 17 D

    Variable description

    You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).

    DepMap ID
    Cell name COSMIC ID
    Sex Race Culture Collection site
    Type
    Cancer
    TCGA code
    Network
    ACH-000058 ML1 1240178.0 Unknown - - thyroid - Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000163 SW579 - Male caucasian Adherent thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000174 CAL62 906828.0 Female - - pleural_effusion Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000191 BHT101 906696.0 Female - - lymph_node Metastasis Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000456 BCPAP 924104.0 Female - - thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000716 TT2609C02 1240223.0 Male caucasian Adherent thyroid - Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000897 FTC238 - Male - - lung Metastasis Thyroid Cancer THCA
    Adj359 MBVis
    ACH-000903 FTC133 906864.0 Male - Adherent thyroid Metastasis Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001306 8305C 906795.0 Female - Adherent thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001307 8505C 924102.0 Female - - thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001321 TT - Female caucasian - thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001356 MB1 - Male - Adherent thyroid Primary Thyroid Cancer -
    Adj359 MBVis
    ACH-001384 RO82W1 930083.0 Female - - thyroid Metastasis Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001443 ASH3 1290722.0 Female - Adherent thyroid Primary Thyroid Cancer THCA
    Adj359 MBVis
    ACH-001528 IHH4 1240154.0 Male - Adherent lymph_node Metastasis Thyroid Cancer THCA
    Adj359 MBVis
    ACH-002041 HOTHC - Female - Adherent thyroid Primary Thyroid Cancer -
    Adj359 MBVis
    ACH-002042 T3M5 - Female - Adherent thyroid Primary Thyroid Cancer -
    Adj359 MBVis
    DepMap ID CCLE Name COSMIC ID Sex Race Culture Collection site Type Cancer TCGA code Network
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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