To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. LIONESS reconstructs sample-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Motif | Expr. |
Reg. |
nReg |
Genes | Data | Samples | Precision |
Ref. |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Thyroid Cancer | LIONESS | netZooPy 0.8 | TF | 1132 | 18560 | CCLE | 21 | D |
Variable description
You can specify the sample network to download by phenotypic variable and you will get a TF/miRNA-by-gene matrix named after the CCLE sample reference. The number of edges is the number of TFs/miRNA * number of genes (~ 106).
| DepMap ID |
Cell name | COSMIC ID |
Sex | Race | Culture | Collection site |
Type |
Cancer |
TCGA code |
Network |
|---|---|---|---|---|---|---|---|---|---|---|
| ACH-000058 | ML1 | 1240178.0 | Unknown | - | - | thyroid | - | Thyroid Cancer | THCA | |
| ACH-000163 | SW579 | - | Male | caucasian | Adherent | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-000174 | CAL62 | 906828.0 | Female | - | - | pleural_effusion | Primary | Thyroid Cancer | THCA | |
| ACH-000191 | BHT101 | 906696.0 | Female | - | - | lymph_node | Metastasis | Thyroid Cancer | THCA | |
| ACH-000456 | BCPAP | 924104.0 | Female | - | - | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-000716 | TT2609C02 | 1240223.0 | Male | caucasian | Adherent | thyroid | - | Thyroid Cancer | THCA | |
| ACH-000897 | FTC238 | - | Male | - | - | lung | Metastasis | Thyroid Cancer | THCA | |
| ACH-000903 | FTC133 | 906864.0 | Male | - | Adherent | thyroid | Metastasis | Thyroid Cancer | THCA | |
| ACH-001306 | 8305C | 906795.0 | Female | - | Adherent | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-001307 | 8505C | 924102.0 | Female | - | - | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-001321 | TT | - | Female | caucasian | - | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-001356 | MB1 | - | Male | - | Adherent | thyroid | Primary | Thyroid Cancer | - | |
| ACH-001384 | RO82W1 | 930083.0 | Female | - | - | thyroid | Metastasis | Thyroid Cancer | THCA | |
| ACH-001443 | ASH3 | 1290722.0 | Female | - | Adherent | thyroid | Primary | Thyroid Cancer | THCA | |
| ACH-001528 | IHH4 | 1240154.0 | Male | - | Adherent | lymph_node | Metastasis | Thyroid Cancer | THCA | |
| ACH-002041 | HOTHC | - | Female | - | Adherent | thyroid | Primary | Thyroid Cancer | - | |
| ACH-002042 | T3M5 | - | Female | - | Adherent | thyroid | Primary | Thyroid Cancer | - | |
| DepMap ID | CCLE Name | COSMIC ID | Sex | Race | Culture | Collection site | Type | Cancer | TCGA code | Network |