GRAND

To get the full list of phenotypic variables, please check the menu below. Click on the bar plot to access the network view page.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. EGRET reconstructs genotype-specific PANDA networks for each gene expression sample. To download sample-specific networks, you can check the phenotypic information and select the networks by variables of interest.

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#	Tissue	Tool	netZoo release	Network	PPI	Motif	Expression	Regulator	nReg	Genes	Genotypes	QBIC	eQTLs	Data	Samples	Precision	Reference
1	IPSC	EGRET	netZooR 0.9	Adj Code Vis				TF	687	9394				Banovich et al.	119	D
2	IPSC	PANDA	netZooR 0.9	Adj Code Vis				TF	687	9394	-	-	-	Banovich et al.	119	D

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Variable description

You can specify the sample network to download by phenotypic variable and you will get a TF-by-gene matrix named after the sample in Banovich et al.

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Sample name	Biosamaple ID	Sex	Pop. code	Pop. name	Superpop. code	Superpop. name	Pop. ID	Data collections	Network

NA18486	SAME124099	male	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18487	SAME124098	male	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18488	SAME124103	female	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18489	SAME124102	female	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18498	SAME124058	male	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18499	SAME124059	female	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18501	SAME124991	male	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release	Adj108 MBVis
NA18502	SAME125055	female	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis
NA18504	SAME125061	male	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release	Adj108 MBVis
NA18505	SAME125062	female	YRI	Yoruba	AFR	African Ancestry	YRI	1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis	Adj108 MBVis

Showing 1 to 10 of 119 entries

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IPSC networks

Networks

Tool description

Phenotypic information Banovich et al.

Variable description