Minor salivary gland networks

Data sets 1 Networks Aggregate 3

To get the full list of phenotypic variables, please check the menu below.

Tool description

PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

Variable description

PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

SampleSubjectGender
AgeDTH-HRDY
SMAT-SSCR
SMRIN
SMTS
SMUBRID
Isch. time
Time point
GTEX-1117F-3026-SM-5GZYU GTEX-1117F 2 60-69 4 1 8.3 Salivary Gland 6330 1343 Actual Death
GTEX-111FC-2926-SM-5GZY7 GTEX-111FC 1 60-69 1 1 8.1 Salivary Gland 6330 1143 Presumed Death
GTEX-1192X-2926-SM-5N9BA GTEX-1192X 1 50-59 4 1 8 Salivary Gland 6330 958 Actual Death
GTEX-11EMC-2526-SM-5PNVU GTEX-11EMC 2 60-69 2 1 9.1 Salivary Gland 6330 746 Actual Death
GTEX-11EQ9-2026-SM-5P9JI GTEX-11EQ9 1 30-39 2 1 8 Salivary Gland 6330 141 Actual Death
GTEX-11NV4-1926-SM-5N9D4 GTEX-11NV4 1 60-69 2 1 8.2 Salivary Gland 6330 1191 Presumed Death
GTEX-11P81-2026-SM-5P9GT GTEX-11P81 2 30-39 0 1 8.2 Salivary Gland 6330 315 Actual Death
GTEX-11P82-0926-SM-5986X GTEX-11P82 1 20-29 1 0 9.2 Salivary Gland 6330 164 Actual Death
GTEX-11TUW-2426-SM-5EQKB GTEX-11TUW 1 60-69 2 1 8.1 Salivary Gland 6330 794 Actual Death
GTEX-11WQK-2926-SM-5EQKT GTEX-11WQK 1 50-59 2 1 8.7 Salivary Gland 6330 817 Actual Death
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