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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference Sonawane et al. (2017) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    # Tissue Tool netZoo release Network
    PPI
    Reg. prior Expr.
    Reg.
    nReg
    Genes Samples Precision
    Reference
    1 Minor salivary gland PANDA netZooM 0.1
    coR
    Motif TF 644 30243 70 D
    2 Minor salivary gland PUMA netZooM 0.3
    coR
    - miRanda miRNA 643 16161 469 D
    3 Minor salivary gland PUMA netZooM 0.3
    coR
    - TargetScan miRNA 643 16161 469 D

    Variable description

    This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample Subject Gender
    Age DTH-HRDY
    SMAT-SSCR
    SMRIN
    SMTS
    SMTSD
    SMUBRID
    SMTSISCH
    GTEX-1117F-3026-SM-5GZYU GTEX-1117F 2 60-69 4 1 8.3 Salivary Gland Minor Salivary Gland 6330 1343
    GTEX-111FC-2926-SM-5GZY7 GTEX-111FC 1 60-69 1 1 8.1 Salivary Gland Minor Salivary Gland 6330 1143
    GTEX-1192X-2926-SM-5N9BA GTEX-1192X 1 50-59 4 1 8 Salivary Gland Minor Salivary Gland 6330 958
    GTEX-11EMC-2526-SM-5PNVU GTEX-11EMC 2 60-69 2 1 9.1 Salivary Gland Minor Salivary Gland 6330 746
    GTEX-11EQ9-2026-SM-5P9JI GTEX-11EQ9 1 30-39 2 1 8 Salivary Gland Minor Salivary Gland 6330 141
    GTEX-11NV4-1926-SM-5N9D4 GTEX-11NV4 1 60-69 2 1 8.2 Salivary Gland Minor Salivary Gland 6330 1191
    GTEX-11P81-2026-SM-5P9GT GTEX-11P81 2 30-39 0 1 8.2 Salivary Gland Minor Salivary Gland 6330 315
    GTEX-11P82-0926-SM-5986X GTEX-11P82 1 20-29 1 0 9.2 Salivary Gland Minor Salivary Gland 6330 164
    GTEX-11TUW-2426-SM-5EQKB GTEX-11TUW 1 60-69 2 1 8.1 Salivary Gland Minor Salivary Gland 6330 794
    GTEX-11WQK-2926-SM-5EQKT GTEX-11WQK 1 50-59 2 1 8.7 Salivary Gland Minor Salivary Gland 6330 817
    GTEX-11ZTS-3026-SM-5EQM7 GTEX-11ZTS 2 60-69 2 1 8.5 Salivary Gland Minor Salivary Gland 6330 719
    GTEX-11ZTT-2226-SM-5CVLP GTEX-11ZTT 2 60-69 0 0 7.3 Salivary Gland Minor Salivary Gland 6330 234
    GTEX-12BJ1-2226-SM-5BC6G GTEX-12BJ1 1 60-69 0 1 9.4 Salivary Gland Minor Salivary Gland 6330 182
    GTEX-12WSL-2126-SM-5GCNG GTEX-12WSL 1 50-59 0 0 8.2 Salivary Gland Minor Salivary Gland 6330 329
    GTEX-12WSM-1826-SM-5BC64 GTEX-12WSM 1 60-69 2 1 7.2 Salivary Gland Minor Salivary Gland 6330 1019
    GTEX-12WSN-2226-SM-5DUXT GTEX-12WSN 1 40-49 0 1 6.7 Salivary Gland Minor Salivary Gland 6330 265
    GTEX-13111-2326-SM-5LZUQ GTEX-13111 1 50-59 0 1 8.1 Salivary Gland Minor Salivary Gland 6330 344
    GTEX-13113-1526-SM-5EGHV GTEX-13113 2 60-69 0 1 8.6 Salivary Gland Minor Salivary Gland 6330 270
    GTEX-1314G-2026-SM-5LZUM GTEX-1314G 1 30-39 0 0 8 Salivary Gland Minor Salivary Gland 6330 526
    GTEX-131XF-2826-SM-5EGKH GTEX-131XF 1 60-69 0 0 7.5 Salivary Gland Minor Salivary Gland 6330 418
    GTEX-131XH-2626-SM-5GCNP GTEX-131XH 1 50-59 2 1 7.8 Salivary Gland Minor Salivary Gland 6330 1256
    GTEX-1339X-2326-SM-5HL5B GTEX-1339X 1 40-49 0 0 8.1 Salivary Gland Minor Salivary Gland 6330 197
    GTEX-13CF2-2426-SM-5LZYL GTEX-13CF2 1 60-69 2 1 6.8 Salivary Gland Minor Salivary Gland 6330 1419
    GTEX-13G51-2426-SM-5LZY8 GTEX-13G51 1 60-69 2 1 7.7 Salivary Gland Minor Salivary Gland 6330 829
    GTEX-13JVG-2926-SM-5J2N9 GTEX-13JVG 1 60-69 2 0 6.9 Salivary Gland Minor Salivary Gland 6330 901
    GTEX-13NYB-2426-SM-5IFF4 GTEX-13NYB 1 40-49 2 1 7.5 Salivary Gland Minor Salivary Gland 6330 1088
    GTEX-13NYC-2626-SM-5K7VN GTEX-13NYC 1 60-69 2 1 6.1 Salivary Gland Minor Salivary Gland 6330 1070
    GTEX-13O21-1926-SM-5MR39 GTEX-13O21 1 50-59 0 1 7.6 Salivary Gland Minor Salivary Gland 6330 220
    GTEX-13O3Q-2826-SM-5KM2N GTEX-13O3Q 1 50-59 2 1 6.8 Salivary Gland Minor Salivary Gland 6330 1167
    GTEX-13OVI-2326-SM-5KM47 GTEX-13OVI 2 60-69 0 1 7.2 Salivary Gland Minor Salivary Gland 6330 244
    GTEX-13OVL-2926-SM-5IFG3 GTEX-13OVL 1 50-59 2 1 7.8 Salivary Gland Minor Salivary Gland 6330 1021
    GTEX-13QBU-2126-SM-5KLZN GTEX-13QBU 2 40-49 0 0 8.9 Salivary Gland Minor Salivary Gland 6330 253
    GTEX-13QJC-2326-SM-5Q5CD GTEX-13QJC 2 60-69 2 1 6.8 Salivary Gland Minor Salivary Gland 6330 1123
    GTEX-13VXT-1726-SM-5IFF5 GTEX-13VXT 2 20-29 0 0 8.1 Salivary Gland Minor Salivary Gland 6330 541
    GTEX-1445S-2926-SM-5O993 GTEX-1445S 1 60-69 3 1 7.6 Salivary Gland Minor Salivary Gland 6330 860
    GTEX-145ME-1626-SM-5RQI3 GTEX-145ME 2 40-49 0 0 8.1 Salivary Gland Minor Salivary Gland 6330 283
    GTEX-146FR-1226-SM-5SIA7 GTEX-146FR 2 60-69 0 1 8.1 Salivary Gland Minor Salivary Gland 6330 1634
    GTEX-14B4R-1426-SM-5Q5CG GTEX-14B4R 1 30-39 0 0 8 Salivary Gland Minor Salivary Gland 6330 265
    GTEX-WFJO-2026-SM-4LVM3 GTEX-WFJO 1 30-39 0 1 8.9 Salivary Gland Minor Salivary Gland 6330 297
    GTEX-WH7G-2126-SM-4M1XU GTEX-WH7G 1 40-49 0 1 7.9 Salivary Gland Minor Salivary Gland 6330 358
    GTEX-WHSB-2326-SM-4M1XK GTEX-WHSB 1 50-59 0 0 8.8 Salivary Gland Minor Salivary Gland 6330 320
    GTEX-WOFM-2126-SM-4OOSR GTEX-WOFM 1 20-29 0 1 7.6 Salivary Gland Minor Salivary Gland 6330 274
    GTEX-WY7C-1426-SM-4OND1 GTEX-WY7C 1 50-59 0 1 8.9 Salivary Gland Minor Salivary Gland 6330 198
    GTEX-WYVS-2026-SM-4PQZ4 GTEX-WYVS 2 40-49 0 1 8.8 Salivary Gland Minor Salivary Gland 6330 304
    GTEX-WYVS-2026-SM-4RGNS GTEX-WYVS 2 40-49 0 1 8.8 Salivary Gland Minor Salivary Gland 6330 304
    GTEX-X15G-2126-SM-4PQZR GTEX-X15G 2 50-59 0 0 8.1 Salivary Gland Minor Salivary Gland 6330 334
    GTEX-X261-2426-SM-4PQZU GTEX-X261 1 50-59 4 1 7.5 Salivary Gland Minor Salivary Gland 6330 894
    GTEX-X3Y1-1926-SM-4PQZO GTEX-X3Y1 1 40-49 0 1 7.8 Salivary Gland Minor Salivary Gland 6330 168
    GTEX-X5EB-1726-SM-4E3J7 GTEX-X5EB 1 40-49 0 1 8.5 Salivary Gland Minor Salivary Gland 6330 254
    GTEX-XGQ4-2626-SM-4AT6B GTEX-XGQ4 1 50-59 0 1 7.8 Salivary Gland Minor Salivary Gland 6330 219
    GTEX-XMK1-2626-SM-4B65R GTEX-XMK1 1 40-49 0 1 8.1 Salivary Gland Minor Salivary Gland 6330 238
    GTEX-XV7Q-2426-SM-4BRV8 GTEX-XV7Q 2 40-49 0 1 8.7 Salivary Gland Minor Salivary Gland 6330 139
    GTEX-XYKS-2926-SM-4E3IA GTEX-XYKS 2 60-69 0 1 7.4 Salivary Gland Minor Salivary Gland 6330 246
    GTEX-Y111-2626-SM-4TT24 GTEX-Y111 1 50-59 1 1 7.9 Salivary Gland Minor Salivary Gland 6330 1567
    GTEX-Y3I4-1926-SM-4TT8L GTEX-Y3I4 1 50-59 0 0 9.2 Salivary Gland Minor Salivary Gland 6330 164
    GTEX-Y5LM-1826-SM-4VDT9 GTEX-Y5LM 2 40-49 0 0 9.5 Salivary Gland Minor Salivary Gland 6330 179
    GTEX-Y5V6-2226-SM-4VDTC GTEX-Y5V6 1 60-69 0 1 8.1 Salivary Gland Minor Salivary Gland 6330 197
    GTEX-YB5K-1726-SM-5IFIZ GTEX-YB5K 2 40-49 0 1 8.1 Salivary Gland Minor Salivary Gland 6330 244
    GTEX-YF7O-2226-SM-5CVN8 GTEX-YF7O 1 50-59 0 1 7.6 Salivary Gland Minor Salivary Gland 6330 210
    GTEX-ZA64-1726-SM-5CVMF GTEX-ZA64 1 20-29 0 1 7.5 Salivary Gland Minor Salivary Gland 6330 177
    GTEX-ZAB5-2326-SM-5IJFR GTEX-ZAB5 1 50-59 0 1 7.2 Salivary Gland Minor Salivary Gland 6330 248
    GTEX-ZC5H-2726-SM-5KLZW GTEX-ZC5H 2 40-49 0 1 7.3 Salivary Gland Minor Salivary Gland 6330 341
    GTEX-ZE7O-2926-SM-51MSG GTEX-ZE7O 2 50-59 2 1 7 Salivary Gland Minor Salivary Gland 6330 1240
    GTEX-ZF29-2126-SM-4WWB8 GTEX-ZF29 2 60-69 0 0 9.3 Salivary Gland Minor Salivary Gland 6330 167
    GTEX-ZP4G-1926-SM-57WDZ GTEX-ZP4G 2 20-29 0 1 9.4 Salivary Gland Minor Salivary Gland 6330 249
    GTEX-ZPU1-2326-SM-57WEP GTEX-ZPU1 1 40-49 0 1 8.2 Salivary Gland Minor Salivary Gland 6330 158
    GTEX-ZQG8-2126-SM-4YCF1 GTEX-ZQG8 2 60-69 0 2 8.4 Salivary Gland Minor Salivary Gland 6330 190
    GTEX-ZQUD-2126-SM-51MSY GTEX-ZQUD 1 30-39 0 1 7.6 Salivary Gland Minor Salivary Gland 6330 258
    GTEX-ZT9W-2126-SM-51MSF GTEX-ZT9W 1 50-59 0 0 8.9 Salivary Gland Minor Salivary Gland 6330 158
    GTEX-ZXG5-2826-SM-5NQ8T GTEX-ZXG5 1 60-69 3 1 7.6 Salivary Gland Minor Salivary Gland 6330 1288
    Contact

    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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