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    v0.1 cell line networks
    v0.2 aggregate tissue networks
    v0.3 TF enrichement tool
    v0.4 single-sample tissue networks
    v0.5 CLUEreg tool
    v0.6 colon cancer networks
    v0.7 drug networks
    v0.7.1 API v1
    v0.8 liver, cervix, and breast cancer networks
    v0.9 miRNA tissue networks
    v0.9.1 bootstrap 5
    v1.0 glioblastoma networks
    v1.0.1 drug combinations
    v1.1 Cell line networks
    v1.2 User upload network
    v1.2.1 Gene targeting table
    v1.2.2 DRAGON miRNA network
    v1.3 Network comparison
    v1.3.1 Guided tours
    v1.4.0 CCLE multi-omic map
    v1.5.0 EGRET networks
    v1.6.0 BONOBO networks
    v1.7.0 tcga-data-nf networks

    Ovary networks

    Data sets 1 Networks Aggregate 3

    To get the full list of phenotypic variables, please check the menu below.

    Tool description

    PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.

    Publication
    Please check the reference Sonawane et al. (2017) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    Publication
    Please check the reference Kuijjer et al. (2020) at the following link.
    # Tissue Tool netZoo release Network
    		 PPI
    		 Regulation prior Expression
    		 Regulator
    		 nReg
    		 Genes Samples Precision
    		 Reference
    1 Ovary PANDA netZooM 0.1
    AdjCodeVis
    		 Motif TF 644 30243 108 D
    2 Ovary PUMA netZooM 0.3
    AdjCodeVis
    		 - miRanda miRNA 643 16161 108 D
    3 Ovary PUMA netZooM 0.3
    AdjCodeVis
    		 - TargetScan miRNA 643 16161 108 D

    Variable description

    PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.

    Sample Subject Gender
    		Age DTH-HRDY
    		 SMAT-SSCR
    		 SMRIN
    		 SMTS
    		 SMUBRID
    		 Isch. time
    		 Time point
    GTEX-1117F-2226-SM-5N9CH GTEX-1117F 2 60-69 4 1 6.6 Ovary 2119 1326 Actual Death
    GTEX-11DXX-1426-SM-5GIDU GTEX-11DXX 2 60-69 0 1 7.3 Ovary 2119 117 Actual Death
    GTEX-11EM3-1726-SM-5N9D1 GTEX-11EM3 2 20-29 0 0 8.8 Ovary 2119 194 Actual Death
    GTEX-11EMC-1726-SM-5H11P GTEX-11EMC 2 60-69 2 1 7.6 Ovary 2119 731 Actual Death
    GTEX-11GSP-0226-SM-5A5KV GTEX-11GSP 2 60-69 2 0 7.5 Ovary 2119 764 Actual Death
    GTEX-11I78-1926-SM-59878 GTEX-11I78 2 50-59 0 1 8.6 Ovary 2119 130 Actual Death
    GTEX-11P81-1526-SM-5P9GS GTEX-11P81 2 30-39 0 0 8.5 Ovary 2119 282 Actual Death
    GTEX-11VI4-1026-SM-5EQM1 GTEX-11VI4 2 40-49 0 0 8.3 Ovary 2119 143 Actual Death
    GTEX-11XUK-1626-SM-5GU5O GTEX-11XUK 2 40-49 0 0 7.6 Ovary 2119 167 Actual Death
    GTEX-11ZTS-1926-SM-5CVLA GTEX-11ZTS 2 60-69 2 1 6.4 Ovary 2119 683 Actual Death
    GTEX-11ZTT-1826-SM-5CVLN GTEX-11ZTT 2 60-69 0 1 6.6 Ovary 2119 207 Actual Death
    GTEX-11ZVC-1426-SM-5EGGA GTEX-11ZVC 2 50-59 2 1 7.2 Ovary 2119 553 Actual Death
    GTEX-1269C-1826-SM-5N9E1 GTEX-1269C 2 60-69 2 1 5.7 Ovary 2119 827 Actual Death
    GTEX-12WSB-2226-SM-5GCOS GTEX-12WSB 2 60-69 4 1 5.9 Ovary 2119 1158 Actual Death
    GTEX-12WSD-2726-SM-59HLR GTEX-12WSD 2 60-69 2 1 7.1 Ovary 2119 551 Actual Death
    GTEX-12WSG-1426-SM-5FQUK GTEX-12WSG 2 50-59 0 0 6.6 Ovary 2119 355 Actual Death
    GTEX-12WSJ-1226-SM-5LU91 GTEX-12WSJ 2 40-49 0 0 8.1 Ovary 2119 144 Actual Death
    GTEX-12WSK-1926-SM-5LZVK GTEX-12WSK 2 40-49 0 1 7.7 Ovary 2119 193 Actual Death
    GTEX-12ZZX-2026-SM-5LZV9 GTEX-12ZZX 2 40-49 1 1 6 Ovary 2119 679 Actual Death
    GTEX-1313W-2726-SM-5P9IX GTEX-1313W 2 50-59 2 1 7.1 Ovary 2119 730 Actual Death
    GTEX-131YS-2226-SM-5P9G8 GTEX-131YS 2 60-69 2 0 6.7 Ovary 2119 1006 Actual Death
    GTEX-132AR-1426-SM-5IFF1 GTEX-132AR 2 50-59 0 0 7.9 Ovary 2119 104 Actual Death
    GTEX-133LE-1226-SM-5IFGC GTEX-133LE 2 20-29 0 0 7.6 Ovary 2119 174 Actual Death
    GTEX-1399S-2126-SM-5J2MH GTEX-1399S 2 30-39 0 1 8.2 Ovary 2119 143 Actual Death
    GTEX-1399U-1726-SM-5P9J4 GTEX-1399U 2 50-59 0 1 8.3 Ovary 2119 212 Actual Death
    GTEX-139D8-2426-SM-5KM3A GTEX-139D8 2 30-39 0 1 6.8 Ovary 2119 465 Actual Death
    GTEX-13D11-1126-SM-5KLYS GTEX-13D11 2 50-59 0 1 7.2 Ovary 2119 120 Actual Death
    GTEX-13FTX-0926-SM-5IFF7 GTEX-13FTX 2 20-29 0 0 6.3 Ovary 2119 174 Actual Death
    GTEX-13N11-0526-SM-5IJFI GTEX-13N11 2 50-59 0 0 7.5 Ovary 2119 167 Actual Death
    GTEX-13O3O-2726-SM-5KM35 GTEX-13O3O 2 60-69 3 0 5.9 Ovary 2119 877 Actual Death
    GTEX-13OVI-0726-SM-5L3DD GTEX-13OVI 2 60-69 0 1 8 Ovary 2119 163 Actual Death
    GTEX-13OVJ-2426-SM-5KM3I GTEX-13OVJ 2 50-59 2 1 6.8 Ovary 2119 1167 Actual Death
    GTEX-13PL7-2326-SM-5L3FY GTEX-13PL7 2 60-69 0 1 6.7 Ovary 2119 176 Actual Death
    GTEX-13PVR-1226-SM-5RQJ2 GTEX-13PVR 2 60-69 0 1 8.2 Ovary 2119 137 Actual Death
    GTEX-13QBU-1526-SM-5LU3W GTEX-13QBU 2 40-49 0 1 7.3 Ovary 2119 213 Actual Death
    GTEX-13QIC-1526-SM-5IJFL GTEX-13QIC 2 60-69 2 1 6.4 Ovary 2119 826 Actual Death
    GTEX-13U4I-2126-SM-5LU55 GTEX-13U4I 2 40-49 0 1 7.6 Ovary 2119 454 Actual Death
    GTEX-13VXT-1526-SM-5LU3J GTEX-13VXT 2 20-29 0 1 6.3 Ovary 2119 533 Actual Death
    GTEX-13W3W-1526-SM-5LU5I GTEX-13W3W 2 60-69 0 1 7.7 Ovary 2119 235 Actual Death
    GTEX-13X6H-1026-SM-5SIBE GTEX-13X6H 2 50-59 0 1 8.6 Ovary 2119 218 Actual Death
    GTEX-145ME-1226-SM-5SIB6 GTEX-145ME 2 40-49 0 1 7.3 Ovary 2119 296 Actual Death
    GTEX-146FH-2526-SM-5Q5BP GTEX-146FH 2 50-59 0 1 6.7 Ovary 2119 490 Actual Death
    GTEX-14AS3-1326-SM-5RQJE GTEX-14AS3 2 40-49 0 0 5.9 Ovary 2119 131 Actual Death
    GTEX-OHPK-2426-SM-3MJGH GTEX-OHPK 2 50-59 0 1 8.1 Ovary 2119 521 Actual Death
    GTEX-OHPL-2426-SM-48TDN GTEX-OHPL 2 60-69 0 1 5.9 Ovary 2119 141 Actual Death
    GTEX-P4PP-2426-SM-3P61L GTEX-P4PP 2 30-39 0 1 7.4 Ovary 2119 143 Actual Death
    GTEX-P4QT-2426-SM-3NMCL GTEX-P4QT 2 50-59 0 1 7.3 Ovary 2119 156 Actual Death
    GTEX-P78B-1926-SM-3P616 GTEX-P78B 2 40-49 - 1 7.7 Ovary 2119 598 Actual Death
    GTEX-PLZ4-2826-SM-3P617 GTEX-PLZ4 2 50-59 - 1 6 Ovary 2119 730 Actual Death
    GTEX-POMQ-1426-SM-3P61D GTEX-POMQ 2 20-29 0 1 7.1 Ovary 2119 258 Actual Death
    GTEX-PWCY-1326-SM-48TCU GTEX-PWCY 2 20-29 0 0 7.5 Ovary 2119 249 Actual Death
    GTEX-PWN1-2426-SM-48TDD GTEX-PWN1 2 40-49 0 0 7.7 Ovary 2119 157 Actual Death
    GTEX-PWOO-1726-SM-48TDC GTEX-PWOO 2 40-49 0 0 8.5 Ovary 2119 216 Actual Death
    GTEX-PX3G-2426-SM-48TZZ GTEX-PX3G 2 20-29 0 0 8.3 Ovary 2119 185 Actual Death
    GTEX-Q734-0726-SM-48TZP GTEX-Q734 2 40-49 0 1 8.5 Ovary 2119 66 Actual Death
    GTEX-QCQG-1426-SM-48U22 GTEX-QCQG 2 50-59 0 1 7.7 Ovary 2119 236 Actual Death
    GTEX-QVJO-3126-SM-4R1KC GTEX-QVJO 2 60-69 4 1 6.3 Ovary 2119 1287 Actual Death
    GTEX-R55G-1526-SM-48FER GTEX-R55G 2 40-49 0 0 7.4 Ovary 2119 138 Actual Death
    GTEX-RTLS-2326-SM-46MUH GTEX-RTLS 2 60-69 4 1 7 Ovary 2119 690 Actual Death
    GTEX-RU1J-0826-SM-46MUU GTEX-RU1J 2 20-29 0 1 7.5 Ovary 2119 239 Actual Death
    GTEX-RU72-2226-SM-46MUE GTEX-RU72 2 50-59 2 1 7 Ovary 2119 521 Actual Death
    GTEX-RWS6-1026-SM-47JXD GTEX-RWS6 2 60-69 0 1 8.2 Ovary 2119 181 Actual Death
    GTEX-S32W-1226-SM-4AD67 GTEX-S32W 2 50-59 0 0 6.5 Ovary 2119 322 Actual Death
    GTEX-S341-0726-SM-4AD5R GTEX-S341 2 40-49 0 0 7.3 Ovary 2119 182 Actual Death
    GTEX-S4P3-0926-SM-4AD54 GTEX-S4P3 2 50-59 0 1 6.8 Ovary 2119 193 Actual Death
    GTEX-S4UY-1026-SM-4AD53 GTEX-S4UY 2 40-49 0 1 8.2 Ovary 2119 421 Actual Death
    GTEX-S7SF-1326-SM-4AD4P GTEX-S7SF 2 20-29 0 0 6 Ovary 2119 321 Actual Death
    GTEX-T2IS-2026-SM-4DM6W GTEX-T2IS 2 20-29 1 1 6.5 Ovary 2119 1208 Actual Death
    GTEX-T5JW-0426-SM-4DM7M GTEX-T5JW 2 20-29 0 1 6.8 Ovary 2119 153 Actual Death
    GTEX-T6MO-1126-SM-4DM5D GTEX-T6MO 2 40-49 0 1 7.2 Ovary 2119 147 Actual Death
    GTEX-TML8-0926-SM-4DXSJ GTEX-TML8 2 40-49 0 1 7.8 Ovary 2119 154 Actual Death
    GTEX-TMMY-1726-SM-4DXTD GTEX-TMMY 2 40-49 0 1 7.9 Ovary 2119 445 Actual Death
    GTEX-TSE9-2226-SM-4DXUR GTEX-TSE9 2 60-69 0 1 7.2 Ovary 2119 1192 Actual Death
    GTEX-U3ZN-1026-SM-4DXTC GTEX-U3ZN 2 30-39 0 0 7.9 Ovary 2119 129 Actual Death
    GTEX-UJHI-1226-SM-4IHLR GTEX-UJHI 2 50-59 0 0 6.8 Ovary 2119 241 Actual Death
    GTEX-W5WG-0926-SM-4RTX9 GTEX-W5WG 2 50-59 0 1 8.3 Ovary 2119 226 Actual Death
    GTEX-WEY5-0626-SM-4LMIA GTEX-WEY5 2 40-49 0 1 8 Ovary 2119 217 Actual Death
    GTEX-WI4N-2526-SM-4OOSE GTEX-WI4N 2 40-49 0 1 7.6 Ovary 2119 783 Actual Death
    GTEX-WWYW-2726-SM-4MVOP GTEX-WWYW 2 50-59 3 1 6.5 Ovary 2119 851 Actual Death
    GTEX-WXYG-1426-SM-4ONCK GTEX-WXYG 2 50-59 0 1 7.3 Ovary 2119 179 Actual Death
    GTEX-WYBS-2426-SM-4ONDI GTEX-WYBS 2 60-69 0 2 6.6 Ovary 2119 943 Actual Death
    GTEX-WYVS-1526-SM-4OND4 GTEX-WYVS 2 40-49 0 1 8.2 Ovary 2119 280 Actual Death
    GTEX-X15G-1726-SM-4PQZN GTEX-X15G 2 50-59 0 1 7.5 Ovary 2119 303 Actual Death
    GTEX-X4EO-2426-SM-4QASD GTEX-X4EO 2 60-69 3 2 6.9 Ovary 2119 832 Actual Death
    GTEX-X8HC-2726-SM-46MUA GTEX-X8HC 2 50-59 0 1 7.2 Ovary 2119 832 Actual Death
    GTEX-XMD3-2326-SM-4AT5H GTEX-XMD3 2 50-59 0 1 6 Ovary 2119 1407 Actual Death
    GTEX-XUJ4-1326-SM-4BOQ9 GTEX-XUJ4 2 60-69 0 1 8.6 Ovary 2119 134 Actual Death
    GTEX-XUW1-0126-SM-4BOOQ GTEX-XUW1 2 50-59 0 0 7.7 Ovary 2119 281 Actual Death
    GTEX-XUZC-1026-SM-4BOPY GTEX-XUZC 2 30-39 0 1 7.6 Ovary 2119 122 Actual Death
    GTEX-XV7Q-1426-SM-4BRWA GTEX-XV7Q 2 40-49 0 1 7.9 Ovary 2119 101 Actual Death
    GTEX-XYKS-1726-SM-4E3IO GTEX-XYKS 2 60-69 0 0 7.8 Ovary 2119 210 Actual Death
    GTEX-Y114-1726-SM-4TT7U GTEX-Y114 2 50-59 0 1 8.4 Ovary 2119 176 Actual Death
    GTEX-Y3IK-2026-SM-4YCDG GTEX-Y3IK 2 50-59 0 0 7.7 Ovary 2119 124 Actual Death
    GTEX-YB5K-1426-SM-5IFIB GTEX-YB5K 2 40-49 0 1 8 Ovary 2119 234 Actual Death
    GTEX-YFC4-2726-SM-5IFJW GTEX-YFC4 2 40-49 1 2 7 Ovary 2119 836 Actual Death
    GTEX-YJ8O-1026-SM-5CVM5 GTEX-YJ8O 2 40-49 1 1 6.1 Ovary 2119 731 Actual Death
    GTEX-ZAJG-2726-SM-5S2MU GTEX-ZAJG 2 50-59 3 1 7.1 Ovary 2119 848 Actual Death
    GTEX-ZC5H-2026-SM-5CVN2 GTEX-ZC5H 2 40-49 0 1 6.8 Ovary 2119 297 Actual Death
    GTEX-ZLWG-0926-SM-4WWC3 GTEX-ZLWG 2 50-59 0 0 8.1 Ovary 2119 103 Actual Death
    GTEX-ZP4G-0626-SM-4WWF1 GTEX-ZP4G 2 20-29 0 1 6.7 Ovary 2119 188 Actual Death
    GTEX-ZPIC-1426-SM-4WWCP GTEX-ZPIC 2 40-49 0 0 8.8 Ovary 2119 151 Actual Death
    GTEX-ZV6S-1426-SM-59HKX GTEX-ZV6S 2 40-49 0 1 8.2 Ovary 2119 387 Actual Death
    GTEX-ZVT2-0326-SM-5E44G GTEX-ZVT2 2 50-59 0 1 9 Ovary 2119 90 Actual Death
    GTEX-ZVT3-2626-SM-5GU5L GTEX-ZVT3 2 60-69 2 1 7 Ovary 2119 642 Actual Death
    GTEX-ZYFG-1726-SM-5GZZB GTEX-ZYFG 2 60-69 0 0 7.9 Ovary 2119 108 Actual Death
    GTEX-ZYWO-1926-SM-5E456 GTEX-ZYWO 2 40-49 0 0 7.3 Ovary 2119 155 Actual Death
    GTEX-ZYY3-2726-SM-5EGH4 GTEX-ZYY3 2 60-69 4 1 6.1 Ovary 2119 538 Actual Death
    GTEX-ZZPU-2126-SM-5EGIU GTEX-ZZPU 2 50-59 0 0 7.8 Ovary 2119 231 Actual Death
    Sample Subject Gender Age DTH-HRDY SMAT-SSCR SMRIN SMTS SMUBRID SMTSISCH SMTSTPTREF
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    Department of Biostatistics
    Harvard T.H. Chan School of Public Health

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