To get the full list of phenotypic variables, please check the menu below.
Tool description
PANDA reconstructs a gene regulatory network using TF PPI, TF DNA binding motif as regulation prior, and gene expression samples. PUMA reconstructs a gene regulatory network with miRNA as regulators using gene expression samples and miRNA predicted targets by miRanda or TargetScan as regulation priors. The Regulator-regulator interaction matrix is set to the identity matrix in the algorithm. Check the phenotypic information for the clinical variables of the samples that were used to reconstruct the network.
| # | Tissue | Tool | netZoo release | Network |
PPI |
Regulation prior | Expression |
Regulator |
nReg |
Genes | Samples | Precision |
Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Prostate | PANDA | netZooM 0.1 | Motif | TF | 644 | 30243 | 119 | D | ||||
| 2 | Prostate | PUMA | netZooM 0.3 | - | miRanda | miRNA | 643 | 16161 | 119 | D | |||
| 3 | Prostate | PUMA | netZooM 0.3 | - | TargetScan | miRNA | 643 | 16161 | 119 | D |
Variable description
PANDA-LIONESS networks are single-sample networks generated by first estimating an aggregate PANDA network then deriving patient-specific LIONESS networks. This is a description of the primary clinical variables of the gene expression samples that were used to generate the gene regulatory network.
| Sample | Subject | Gender |
Age | DTH-HRDY |
SMAT-SSCR |
SMRIN |
SMTS |
SMUBRID |
Isch. time |
Time point |
|---|---|---|---|---|---|---|---|---|---|---|
| GTEX-111CU-1526-SM-5N9FS | GTEX-111CU | 1 | 50-59 | 0 | 1 | 5.7 | Prostate | 2367 | 103 | Actual Death |
| GTEX-111FC-2026-SM-5GZYO | GTEX-111FC | 1 | 60-69 | 1 | 2 | 5.8 | Prostate | 2367 | 1121 | Presumed Death |
| GTEX-111YS-1726-SM-5GIED | GTEX-111YS | 1 | 60-69 | 0 | 1 | 6.3 | Prostate | 2367 | 179 | Actual Death |
| GTEX-117YW-1426-SM-5EGGO | GTEX-117YW | 1 | 50-59 | 3 | 1 | 5.9 | Prostate | 2367 | 884 | Actual Death |
| GTEX-117YX-1526-SM-5H12T | GTEX-117YX | 1 | 50-59 | 0 | 1 | 6.1 | Prostate | 2367 | 110 | Actual Death |
| GTEX-11DXZ-1826-SM-5H12Y | GTEX-11DXZ | 1 | 50-59 | 0 | 0 | 7.5 | Prostate | 2367 | 316 | Actual Death |
| GTEX-11DYG-2526-SM-5N9BB | GTEX-11DYG | 1 | 60-69 | 2 | 3 | 5.7 | Prostate | 2367 | 886 | Actual Death |
| GTEX-11EQ9-1726-SM-5HL6U | GTEX-11EQ9 | 1 | 30-39 | 2 | 1 | 7.6 | Prostate | 2367 | 130 | Actual Death |
| GTEX-11NSD-0826-SM-5986S | GTEX-11NSD | 1 | 20-29 | 0 | 1 | 7.5 | Prostate | 2367 | 91 | Actual Death |
| GTEX-11O72-2726-SM-5HL6K | GTEX-11O72 | 1 | 40-49 | 2 | 3 | 6.1 | Prostate | 2367 | 1012 | Actual Death |
| GTEX-11OF3-1726-SM-5GU5Q | GTEX-11OF3 | 1 | 60-69 | 2 | 3 | 5.9 | Prostate | 2367 | 817 | Presumed Death |
| GTEX-11P7K-0626-SM-5985Z | GTEX-11P7K | 1 | 30-39 | 0 | 1 | 7.9 | Prostate | 2367 | 114 | Actual Death |
| GTEX-11P82-1126-SM-5BC5K | GTEX-11P82 | 1 | 20-29 | 1 | 1 | 7.2 | Prostate | 2367 | 171 | Actual Death |
| GTEX-11TT1-2026-SM-5EQM8 | GTEX-11TT1 | 1 | 20-29 | 0 | 1 | 8.2 | Prostate | 2367 | 107 | Actual Death |
| GTEX-11TUW-2126-SM-5GU7B | GTEX-11TUW | 1 | 60-69 | 2 | 2 | 5.8 | Prostate | 2367 | 781 | Actual Death |
| GTEX-11WQK-2726-SM-5EQMU | GTEX-11WQK | 1 | 50-59 | 2 | 2 | 5.9 | Prostate | 2367 | 814 | Actual Death |
| GTEX-11ZUS-2126-SM-5N9E6 | GTEX-11ZUS | 1 | 30-39 | 1 | 2 | 5.7 | Prostate | 2367 | 1413 | Actual Death |
| GTEX-12696-2226-SM-5EQ65 | GTEX-12696 | 1 | 60-69 | 3 | 2 | 6.7 | Prostate | 2367 | 571 | Actual Death |
| GTEX-12BJ1-1226-SM-5LUAE | GTEX-12BJ1 | 1 | 60-69 | 0 | 1 | 8.3 | Prostate | 2367 | 129 | Actual Death |
| GTEX-12C56-1326-SM-5FQSV | GTEX-12C56 | 1 | 20-29 | 0 | 0 | 6.9 | Prostate | 2367 | 223 | Actual Death |
| GTEX-12ZZZ-2026-SM-5LZWJ | GTEX-12ZZZ | 1 | 60-69 | 2 | 3 | 6 | Prostate | 2367 | 878 | Actual Death |
| GTEX-13111-1326-SM-5GCNO | GTEX-13111 | 1 | 50-59 | 0 | 1 | 7 | Prostate | 2367 | 306 | Actual Death |
| GTEX-131XF-1926-SM-5DUW4 | GTEX-131XF | 1 | 60-69 | 0 | 1 | 6 | Prostate | 2367 | 303 | Actual Death |
| GTEX-132NY-2826-SM-5P9G2 | GTEX-132NY | 1 | 60-69 | 1 | 2 | 6.6 | Prostate | 2367 | 616 | Actual Death |
| GTEX-132QS-1126-SM-5P9GC | GTEX-132QS | 1 | 60-69 | 0 | 1 | 7.6 | Prostate | 2367 | 1573 | Actual Death |
| GTEX-1399R-0526-SM-5IJEF | GTEX-1399R | 1 | 30-39 | 0 | 1 | 7.9 | Prostate | 2367 | 91 | Actual Death |
| GTEX-1399T-1226-SM-5P9J5 | GTEX-1399T | 1 | 60-69 | 2 | 2 | 6.3 | Prostate | 2367 | 783 | Presumed Death |
| GTEX-139T6-1526-SM-5P9G6 | GTEX-139T6 | 1 | 50-59 | 0 | 1 | 6.7 | Prostate | 2367 | 191 | Actual Death |
| GTEX-13FHO-2826-SM-5K7ZA | GTEX-13FHO | 1 | 60-69 | 0 | 2 | 6 | Prostate | 2367 | 764 | Actual Death |
| GTEX-13FTW-1226-SM-5LZZ1 | GTEX-13FTW | 1 | 40-49 | 0 | 1 | 7.6 | Prostate | 2367 | 181 | Actual Death |
| GTEX-13FXS-2826-SM-5LZYC | GTEX-13FXS | 1 | 50-59 | 2 | 2 | 6.2 | Prostate | 2367 | 717 | Actual Death |
| GTEX-13G51-2326-SM-5LZXV | GTEX-13G51 | 1 | 60-69 | 2 | 2 | 5.8 | Prostate | 2367 | 832 | Actual Death |
| GTEX-13N2G-1826-SM-5KM1I | GTEX-13N2G | 1 | 60-69 | 2 | 1 | 6.2 | Prostate | 2367 | 563 | Actual Death |
| GTEX-13NYS-1026-SM-5KLZT | GTEX-13NYS | 1 | 60-69 | 4 | 2 | 6.1 | Prostate | 2367 | 951 | Actual Death |
| GTEX-13O21-1126-SM-5N9EV | GTEX-13O21 | 1 | 50-59 | 0 | 1 | 5.7 | Prostate | 2367 | 194 | Actual Death |
| GTEX-13O61-1726-SM-5KM46 | GTEX-13O61 | 1 | 60-69 | 0 | 0 | 6.8 | Prostate | 2367 | 181 | Actual Death |
| GTEX-13OW8-0426-SM-5J2NR | GTEX-13OW8 | 1 | 60-69 | 2 | 2 | 6 | Prostate | 2367 | 1044 | Actual Death |
| GTEX-13RTJ-2126-SM-5S2PZ | GTEX-13RTJ | 1 | 60-69 | 4 | 1 | 6.3 | Prostate | 2367 | 917 | Actual Death |
| GTEX-144GM-0826-SM-5O98R | GTEX-144GM | 1 | 20-29 | 0 | 1 | 6.9 | Prostate | 2367 | 227 | Actual Death |
| GTEX-145LT-0626-SM-5O99E | GTEX-145LT | 1 | 40-49 | 0 | 1 | 6.1 | Prostate | 2367 | 154 | Actual Death |
| GTEX-145LU-2126-SM-5Q5E9 | GTEX-145LU | 1 | 50-59 | 2 | 1 | 6 | Prostate | 2367 | 1069 | Actual Death |
| GTEX-145LV-1226-SM-5S2QH | GTEX-145LV | 1 | 50-59 | 0 | 1 | 6.3 | Prostate | 2367 | 426 | Actual Death |
| GTEX-146FQ-1726-SM-5QGPX | GTEX-146FQ | 1 | 30-39 | 0 | 1 | 6 | Prostate | 2367 | 538 | Actual Death |
| GTEX-1477Z-2226-SM-5QGPG | GTEX-1477Z | 1 | 60-69 | 4 | 2 | 6.1 | Prostate | 2367 | 729 | Actual Death |
| GTEX-148VJ-1826-SM-5Q5DV | GTEX-148VJ | 1 | 70-79 | 2 | 1 | 6.2 | Prostate | 2367 | 1097 | Actual Death |
| GTEX-14ABY-0726-SM-5Q5DF | GTEX-14ABY | 1 | 50-59 | 2 | 2 | 5.7 | Prostate | 2367 | 1299 | Actual Death |
| GTEX-14BMV-2326-SM-5RQJ4 | GTEX-14BMV | 1 | 50-59 | 2 | 2 | 5.7 | Prostate | 2367 | 660 | Actual Death |
| GTEX-14C5O-2826-SM-5RQI6 | GTEX-14C5O | 1 | 60-69 | 4 | 2 | 6.8 | Prostate | 2367 | 773 | Actual Death |
| GTEX-14E6E-1126-SM-5S2R4 | GTEX-14E6E | 1 | 30-39 | 0 | 1 | 7.6 | Prostate | 2367 | 143 | Actual Death |
| GTEX-NFK9-2226-SM-3MJGP | GTEX-NFK9 | 1 | 40-49 | 0 | 1 | 7.5 | Prostate | 2367 | 382 | Actual Death |
| GTEX-NPJ8-2426-SM-3MJHL | GTEX-NPJ8 | 1 | 40-49 | 4 | 2 | 6.7 | Prostate | 2367 | 356 | Presumed Death |
| GTEX-OIZH-2026-SM-3NB1M | GTEX-OIZH | 1 | 50-59 | 0 | 1 | 6 | Prostate | 2367 | 157 | Actual Death |
| GTEX-OOBJ-2026-SM-3NB1R | GTEX-OOBJ | 1 | 60-69 | 0 | 1 | 7.2 | Prostate | 2367 | 157 | Actual Death |
| GTEX-OOBK-2025-SM-3LK5S | GTEX-OOBK | 1 | 40-49 | 0 | 1 | 6.1 | Prostate | 2367 | 196 | Actual Death |
| GTEX-P4QS-2026-SM-3NMCG | GTEX-P4QS | 1 | 60-69 | 0 | 1 | 6.1 | Prostate | 2367 | 177 | Actual Death |
| GTEX-PLZ6-1126-SM-3P5ZR | GTEX-PLZ6 | 1 | 30-39 | 0 | 1 | 7.3 | Prostate | 2367 | 194 | Actual Death |
| GTEX-Q2AI-1126-SM-48U19 | GTEX-Q2AI | 1 | 40-49 | 0 | 1 | 7.3 | Prostate | 2367 | 153 | Actual Death |
| GTEX-QEG4-2226-SM-4R1JM | GTEX-QEG4 | 1 | 30-39 | 1 | 2 | 6.1 | Prostate | 2367 | 978 | Actual Death |
| GTEX-QLQ7-1326-SM-4R1JY | GTEX-QLQ7 | 1 | 60-69 | 0 | 1 | 6.8 | Prostate | 2367 | 148 | Actual Death |
| GTEX-QMRM-1426-SM-4R1K8 | GTEX-QMRM | 1 | 50-59 | 0 | 1 | 6.7 | Prostate | 2367 | 165 | Actual Death |
| GTEX-QV31-1026-SM-4R1K3 | GTEX-QV31 | 1 | 30-39 | 0 | 1 | 8.3 | Prostate | 2367 | 200 | Actual Death |
| GTEX-QV44-1526-SM-4R1KI | GTEX-QV44 | 1 | 50-59 | 0 | 1 | 5.8 | Prostate | 2367 | 163 | Actual Death |
| GTEX-REY6-2126-SM-48FD9 | GTEX-REY6 | 1 | 60-69 | 0 | 2 | 7.1 | Prostate | 2367 | 329 | Actual Death |
| GTEX-RM2N-1126-SM-48FCY | GTEX-RM2N | 1 | 50-59 | 0 | 1 | 6.2 | Prostate | 2367 | 174 | Actual Death |
| GTEX-RWSA-2026-SM-47JX8 | GTEX-RWSA | 1 | 40-49 | 1 | 1 | 6.1 | Prostate | 2367 | 1376 | Actual Death |
| GTEX-S33H-1826-SM-4AD65 | GTEX-S33H | 1 | 30-39 | 2 | 1 | 6.1 | Prostate | 2367 | 253 | Actual Death |
| GTEX-S3XE-1326-SM-4AD4H | GTEX-S3XE | 1 | 50-59 | 0 | 1 | 7.8 | Prostate | 2367 | 169 | Actual Death |
| GTEX-S4Q7-1026-SM-4AD75 | GTEX-S4Q7 | 1 | 20-29 | 0 | 1 | 8.1 | Prostate | 2367 | 170 | Actual Death |
| GTEX-S95S-1026-SM-4B64M | GTEX-S95S | 1 | 60-69 | 0 | 1 | 6.1 | Prostate | 2367 | 269 | Actual Death |
| GTEX-SJXC-2026-SM-4DM6N | GTEX-SJXC | 1 | 60-69 | 2 | 3 | 5.8 | Prostate | 2367 | 1088 | Actual Death |
| GTEX-SNMC-0926-SM-4DM5U | GTEX-SNMC | 1 | 20-29 | 0 | 1 | 7.1 | Prostate | 2367 | 235 | Actual Death |
| GTEX-SNOS-1026-SM-4DM4Y | GTEX-SNOS | 1 | 40-49 | 0 | 1 | 8 | Prostate | 2367 | 163 | Actual Death |
| GTEX-SUCS-1126-SM-4DM61 | GTEX-SUCS | 1 | 70-79 | 0 | 1 | 7.2 | Prostate | 2367 | 185 | Actual Death |
| GTEX-T5JC-1226-SM-4DM7C | GTEX-T5JC | 1 | 20-29 | 2 | 1 | 6.6 | Prostate | 2367 | 716 | Actual Death |
| GTEX-T8EM-1826-SM-4DM7F | GTEX-T8EM | 1 | 40-49 | 0 | 1 | 5.7 | Prostate | 2367 | 399 | Actual Death |
| GTEX-U3ZH-0926-SM-4DXU4 | GTEX-U3ZH | 1 | 30-39 | 0 | 1 | 6.9 | Prostate | 2367 | 207 | Actual Death |
| GTEX-U3ZM-0926-SM-4DXSW | GTEX-U3ZM | 1 | 40-49 | 0 | 1 | 7.5 | Prostate | 2367 | 231 | Actual Death |
| GTEX-U412-2026-SM-4DXSI | GTEX-U412 | 1 | 60-69 | 3 | 2 | 6.2 | Prostate | 2367 | 1397 | Actual Death |
| GTEX-U4B1-1426-SM-4DXTX | GTEX-U4B1 | 1 | 40-49 | 0 | 1 | 8 | Prostate | 2367 | 203 | Actual Death |
| GTEX-U8XE-2526-SM-4E3IT | GTEX-U8XE | 1 | 30-39 | 4 | 1 | 7.2 | Prostate | 2367 | 437 | Actual Death |
| GTEX-UTHO-2726-SM-4JBH9 | GTEX-UTHO | 1 | 60-69 | 3 | 2 | 7.5 | Prostate | 2367 | 494 | Actual Death |
| GTEX-V1D1-1926-SM-4JBGX | GTEX-V1D1 | 1 | 50-59 | 0 | 2 | 6.7 | Prostate | 2367 | 424 | Actual Death |
| GTEX-V955-1826-SM-4JBIL | GTEX-V955 | 1 | 60-69 | 0 | 1 | 5.8 | Prostate | 2367 | 215 | Actual Death |
| GTEX-VJYA-1226-SM-3GIJ6 | GTEX-VJYA | 1 | 60-69 | 0 | 1 | 7.2 | Prostate | 2367 | 258 | Actual Death |
| GTEX-WFG7-1826-SM-3GIL1 | GTEX-WFG7 | 1 | 20-29 | 0 | 1 | 8.2 | Prostate | 2367 | 203 | Actual Death |
| GTEX-WFG8-1826-SM-4LVM4 | GTEX-WFG8 | 1 | 20-29 | 0 | 1 | 7.7 | Prostate | 2367 | 291 | Actual Death |
| GTEX-WFON-1626-SM-4LVMV | GTEX-WFON | 1 | 40-49 | 0 | 1 | 7.1 | Prostate | 2367 | 207 | Actual Death |
| GTEX-WH7G-1726-SM-4LVKY | GTEX-WH7G | 1 | 40-49 | 0 | 2 | 6.4 | Prostate | 2367 | 324 | Actual Death |
| GTEX-WK11-2626-SM-4OOSK | GTEX-WK11 | 1 | 50-59 | 1 | 1 | 5.8 | Prostate | 2367 | 1009 | Actual Death |
| GTEX-WOFM-0326-SM-4OOSL | GTEX-WOFM | 1 | 20-29 | 0 | 1 | 7 | Prostate | 2367 | 171 | Actual Death |
| GTEX-WY7C-2026-SM-4ONCM | GTEX-WY7C | 1 | 50-59 | 0 | 1 | 6.7 | Prostate | 2367 | 216 | Actual Death |
| GTEX-WYJK-0626-SM-4ONCZ | GTEX-WYJK | 1 | 50-59 | 0 | 1 | 7.5 | Prostate | 2367 | 752 | Actual Death |
| GTEX-WZTO-0926-SM-4PQZ3 | GTEX-WZTO | 1 | 40-49 | 1 | 1 | 7.4 | Prostate | 2367 | 510 | Actual Death |
| GTEX-X5EB-1826-SM-4E3K8 | GTEX-X5EB | 1 | 40-49 | 0 | 1 | 8.3 | Prostate | 2367 | 255 | Actual Death |
| GTEX-XAJ8-0626-SM-47JY4 | GTEX-XAJ8 | 1 | 40-49 | 0 | 1 | 6.4 | Prostate | 2367 | 143 | Actual Death |
| GTEX-XGQ4-1826-SM-4AT6F | GTEX-XGQ4 | 1 | 50-59 | 0 | 1 | 7.2 | Prostate | 2367 | 186 | Actual Death |
| GTEX-XMK1-1026-SM-4B65H | GTEX-XMK1 | 1 | 40-49 | 0 | 1 | 7.2 | Prostate | 2367 | 189 | Actual Death |
| GTEX-XOTO-2826-SM-4B65I | GTEX-XOTO | 1 | 50-59 | 2 | 2 | 6.8 | Prostate | 2367 | 715 | Actual Death |
| GTEX-XPVG-2026-SM-4B65E | GTEX-XPVG | 1 | 50-59 | 0 | 1 | 8.3 | Prostate | 2367 | 187 | Actual Death |
| GTEX-XQ3S-2526-SM-4BOOG | GTEX-XQ3S | 1 | 20-29 | 1 | 2 | 6.9 | Prostate | 2367 | 917 | Actual Death |
| GTEX-XXEK-1226-SM-4BRUY | GTEX-XXEK | 1 | 50-59 | 0 | 1 | 6.4 | Prostate | 2367 | 171 | Actual Death |
| GTEX-Y8E4-2126-SM-5RQHO | GTEX-Y8E4 | 1 | 40-49 | 0 | 1 | 6.4 | Prostate | 2367 | 425 | Actual Death |
| GTEX-Y9LG-1826-SM-4VBQC | GTEX-Y9LG | 1 | 30-39 | 0 | 1 | 7.1 | Prostate | 2367 | 136 | Actual Death |
| GTEX-YB5E-1826-SM-5IFI4 | GTEX-YB5E | 1 | 40-49 | 0 | 1 | 6.7 | Prostate | 2367 | 238 | Actual Death |
| GTEX-YF7O-1926-SM-4W1YQ | GTEX-YF7O | 1 | 50-59 | 0 | 1 | 7.8 | Prostate | 2367 | 187 | Actual Death |
| GTEX-YFCO-1626-SM-4W1Z3 | GTEX-YFCO | 1 | 40-49 | 0 | 1 | 7.8 | Prostate | 2367 | 172 | Actual Death |
| GTEX-YJ8A-1126-SM-5IFJU | GTEX-YJ8A | 1 | 20-29 | 0 | 1 | 6.9 | Prostate | 2367 | 245 | Actual Death |
| GTEX-ZDYS-1226-SM-5IJF3 | GTEX-ZDYS | 1 | 50-59 | 0 | 1 | 7.5 | Prostate | 2367 | 181 | Actual Death |
| GTEX-ZEX8-2026-SM-4WKF3 | GTEX-ZEX8 | 1 | 50-59 | 0 | 1 | 6.4 | Prostate | 2367 | 166 | Actual Death |
| GTEX-ZLFU-1726-SM-4WWBU | GTEX-ZLFU | 1 | 40-49 | 0 | 1 | 5.9 | Prostate | 2367 | 161 | Actual Death |
| GTEX-ZPU1-2026-SM-57WFI | GTEX-ZPU1 | 1 | 40-49 | 0 | 1 | 7.8 | Prostate | 2367 | 141 | Actual Death |
| GTEX-ZT9W-1626-SM-4YCDQ | GTEX-ZT9W | 1 | 50-59 | 0 | 1 | 7.8 | Prostate | 2367 | 133 | Actual Death |
| GTEX-ZTTD-2726-SM-57WFA | GTEX-ZTTD | 1 | 50-59 | 3 | 3 | 8.7 | Prostate | 2367 | 379 | Actual Death |
| GTEX-ZTX8-1026-SM-5EGHD | GTEX-ZTX8 | 1 | 20-29 | 0 | 1 | 8 | Prostate | 2367 | 159 | Actual Death |
| GTEX-ZUA1-2826-SM-59HLE | GTEX-ZUA1 | 1 | 40-49 | 2 | 3 | 6.5 | Prostate | 2367 | 967 | Actual Death |
| GTEX-ZVP2-0826-SM-59HJ6 | GTEX-ZVP2 | 1 | 50-59 | 0 | 1 | 6.1 | Prostate | 2367 | 140 | Actual Death |
| GTEX-ZY6K-1526-SM-5GZXE | GTEX-ZY6K | 1 | 50-59 | 0 | 1 | 6.5 | Prostate | 2367 | 208 | Actual Death |
| GTEX-ZYFD-2526-SM-5E45L | GTEX-ZYFD | 1 | 50-59 | 3 | 3 | 6 | Prostate | 2367 | 658 | Actual Death |
| GTEX-ZZ64-0926-SM-5E44L | GTEX-ZZ64 | 1 | 20-29 | 0 | 0 | 6.2 | Prostate | 2367 | 192 | Actual Death |
| Sample | Subject | Gender | Age | DTH-HRDY | SMAT-SSCR | SMRIN | SMTS | SMUBRID | SMTSISCH | SMTSTPTREF |